Literature DB >> 24816098

Fingerprinting redox and ligand states in haemprotein crystal structures using resonance Raman spectroscopy.

Demet Kekilli1, Florian S N Dworkowski2, Guillaume Pompidor2, Martin R Fuchs2, Colin R Andrew3, Svetlana Antonyuk4, Richard W Strange4, Robert R Eady4, S Samar Hasnain4, Michael A Hough1.   

Abstract

It is crucial to assign the correct redox and ligand states to crystal structures of proteins with an active redox centre to gain valid functional information and prevent the misinterpretation of structures. Single-crystal spectroscopies, particularly when applied in situ at macromolecular crystallography beamlines, allow spectroscopic investigations of redox and ligand states and the identification of reaction intermediates in protein crystals during the collection of structural data. Single-crystal resonance Raman spectroscopy was carried out in combination with macromolecular crystallography on Swiss Light Source beamline X10SA using cytochrome c' from Alcaligenes xylosoxidans. This allowed the fingerprinting and validation of different redox and ligand states, identification of vibrational modes and identification of intermediates together with monitoring of radiation-induced changes. This combined approach provides a powerful tool to obtain complementary data and correctly assign the true oxidation and ligand state(s) in redox-protein crystals.

Entities:  

Keywords:  cytochrome c′; haemproteins; ligand states; redox states; resonance Raman spectroscopy

Mesh:

Substances:

Year:  2014        PMID: 24816098     DOI: 10.1107/S1399004714004039

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  9 in total

1.  Hydrogen bonding of the dissociated histidine ligand is not required for formation of a proximal NO adduct in cytochrome c'.

Authors:  Dlzar D Ghafoor; Demet Kekilli; Gaylany H Abdullah; Florian S N Dworkowski; Hamid G Hassan; Michael T Wilson; Richard W Strange; Michael A Hough
Journal:  J Biol Inorg Chem       Date:  2015-06-23       Impact factor: 3.358

2.  The roles of C-terminal residues on the thermal stability and local heme environment of cytochrome c' from the thermophilic purple sulfur bacterium Thermochromatium tepidum.

Authors:  Yukihiro Kimura; Sachiko Kasuga; Masashi Unno; Takashi Furusawa; Shinsuke Osoegawa; Yuko Sasaki; Takashi Ohno; Zheng-Yu Wang-Otomo
Journal:  Photosynth Res       Date:  2014-12-18       Impact factor: 3.573

Review 3.  From protein structure to function via single crystal optical spectroscopy.

Authors:  Luca Ronda; Stefano Bruno; Stefano Bettati; Paola Storici; Andrea Mozzarelli
Journal:  Front Mol Biosci       Date:  2015-04-28

Review 4.  Sub-atomic resolution X-ray crystallography and neutron crystallography: promise, challenges and potential.

Authors:  Matthew P Blakeley; Samar S Hasnain; Svetlana V Antonyuk
Journal:  IUCrJ       Date:  2015-06-30       Impact factor: 4.769

5.  Serial crystallography captures enzyme catalysis in copper nitrite reductase at atomic resolution from one crystal.

Authors:  Sam Horrell; Svetlana V Antonyuk; Robert R Eady; S Samar Hasnain; Michael A Hough; Richard W Strange
Journal:  IUCrJ       Date:  2016-06-15       Impact factor: 4.769

6.  Engineering proximal vs. distal heme-NO coordination via dinitrosyl dynamics: implications for NO sensor design.

Authors:  Demet Kekilli; Christine A Petersen; David A Pixton; Dlzar D Ghafoor; Gaylany H Abdullah; Florian S N Dworkowski; Michael T Wilson; Derren J Heyes; Samantha J O Hardman; Loretta M Murphy; Richard W Strange; Nigel S Scrutton; Colin R Andrew; Michael A Hough
Journal:  Chem Sci       Date:  2016-11-16       Impact factor: 9.825

7.  Complementarity of neutron, XFEL and synchrotron crystallography for defining the structures of metalloenzymes at room temperature.

Authors:  Tadeo Moreno-Chicano; Leiah M Carey; Danny Axford; John H Beale; R Bruce Doak; Helen M E Duyvesteyn; Ali Ebrahim; Robert W Henning; Diana C F Monteiro; Dean A Myles; Shigeki Owada; Darren A Sherrell; Megan L Straw; Vukica Šrajer; Hiroshi Sugimoto; Kensuke Tono; Takehiko Tosha; Ivo Tews; Martin Trebbin; Richard W Strange; Kevin L Weiss; Jonathan A R Worrall; Flora Meilleur; Robin L Owen; Reza A Ghiladi; Michael A Hough
Journal:  IUCrJ       Date:  2022-07-25       Impact factor: 5.588

8.  Metalloprotein Crystallography: More than a Structure.

Authors:  Sarah E J Bowman; Jennifer Bridwell-Rabb; Catherine L Drennan
Journal:  Acc Chem Res       Date:  2016-03-15       Impact factor: 22.384

9.  Photoreduction and validation of haem-ligand intermediate states in protein crystals by in situ single-crystal spectroscopy and diffraction.

Authors:  Demet Kekilli; Tadeo Moreno-Chicano; Amanda K Chaplin; Sam Horrell; Florian S N Dworkowski; Jonathan A R Worrall; Richard W Strange; Michael A Hough
Journal:  IUCrJ       Date:  2017-04-10       Impact factor: 4.769

  9 in total

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