Literature DB >> 24813689

Unraveling architecture of the pluripotent genome.

Jennifer E Phillips-Cremins1.   

Abstract

Genomes are folded into sophisticated configurations that both shape, and are shaped by, a diverse range of nuclear functions. High-throughput variations of Chromosome-Conformation-Capture-based technologies now enable analysis of architecture at unprecedented resolution and scale. Here I discuss the complex structure-function relationship of the mammalian genome using the model system of embryonic stem cells, and the progression from pluripotency to terminal differentiation and back again.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24813689     DOI: 10.1016/j.ceb.2014.04.006

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  12 in total

1.  Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders.

Authors:  Carlos Gómez-Marín; Juan J Tena; Rafael D Acemel; Macarena López-Mayorga; Silvia Naranjo; Elisa de la Calle-Mustienes; Ignacio Maeso; Leonardo Beccari; Ivy Aneas; Erika Vielmas; Paola Bovolenta; Marcelo A Nobrega; Jaime Carvajal; José Luis Gómez-Skarmeta
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-01       Impact factor: 11.205

Review 2.  Regulation and dysregulation of spatial chromatin structure in the central nervous system.

Authors:  Yuki Fujita
Journal:  Anat Sci Int       Date:  2021-01-03       Impact factor: 1.741

3.  Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain.

Authors:  Maxence Vieux-Rochas; Pierre J Fabre; Marion Leleu; Denis Duboule; Daan Noordermeer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-30       Impact factor: 11.205

4.  Analysis of putative cis-regulatory elements regulating blood pressure variation.

Authors:  Priyanka Nandakumar; Dongwon Lee; Thomas J Hoffmann; Georg B Ehret; Dan Arking; Dilrini Ranatunga; Man Li; Megan L Grove; Eric Boerwinkle; Catherine Schaefer; Pui-Yan Kwok; Carlos Iribarren; Neil Risch; Aravinda Chakravarti
Journal:  Hum Mol Genet       Date:  2020-07-21       Impact factor: 6.150

Review 5.  The Nuclear Option: Evidence Implicating the Cell Nucleus in Mechanotransduction.

Authors:  Spencer E Szczesny; Robert L Mauck
Journal:  J Biomech Eng       Date:  2017-02-01       Impact factor: 2.097

6.  Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression.

Authors:  Jonathan A Beagan; Elissa D Pastuzyn; Lindsey R Fernandez; Michael H Guo; Kelly Feng; Katelyn R Titus; Harshini Chandrashekar; Jason D Shepherd; Jennifer E Phillips-Cremins
Journal:  Nat Neurosci       Date:  2020-05-25       Impact factor: 24.884

7.  HiCPlotter integrates genomic data with interaction matrices.

Authors:  Kadir Caner Akdemir; Lynda Chin
Journal:  Genome Biol       Date:  2015-09-21       Impact factor: 13.583

Review 8.  The Genomic Health of Human Pluripotent Stem Cells: Genomic Instability and the Consequences on Nuclear Organization.

Authors:  Marianne P Henry; J Ross Hawkins; Jennifer Boyle; Joanna M Bridger
Journal:  Front Genet       Date:  2019-01-21       Impact factor: 4.599

Review 9.  CTCF and cellular heterogeneity.

Authors:  Gang Ren; Keji Zhao
Journal:  Cell Biosci       Date:  2019-10-11       Impact factor: 7.133

Review 10.  Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization.

Authors:  Vuthy Ea; Marie-Odile Baudement; Annick Lesne; Thierry Forné
Journal:  Genes (Basel)       Date:  2015-07-27       Impact factor: 4.096

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