Literature DB >> 24804566

Models of chromosome structure.

Mario Nicodemi1, Ana Pombo2.   

Abstract

Understanding the mechanisms that control chromosome folding in the nucleus of eukaryotes and their contribution to gene regulation is a key open issue in molecular biology. Microscopy and chromatin-capture techniques have shown that chromatin has a complex organization, which dynamically changes across organisms and cell types. The need to make sense of such a fascinating complexity has prompted the development of quantitative models from physics, to find the principles of chromosome folding, its origin and function. Here, we concisely review recent advances in chromosome modeling, focusing on a recently proposed framework, the Strings & Binders Switch (SBS) model, which recapitulates key features of chromosome organization in space and time.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24804566     DOI: 10.1016/j.ceb.2014.04.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  33 in total

1.  Physical Modeling of Dynamic Coupling between Chromosomal Loci.

Authors:  Thomas J Lampo; Andrew S Kennard; Andrew J Spakowitz
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

Review 2.  Nuclear bodies: the emerging biophysics of nucleoplasmic phases.

Authors:  Lian Zhu; Clifford P Brangwynne
Journal:  Curr Opin Cell Biol       Date:  2015-05-15       Impact factor: 8.382

Review 3.  Predicting chromatin architecture from models of polymer physics.

Authors:  Simona Bianco; Andrea M Chiariello; Carlo Annunziatella; Andrea Esposito; Mario Nicodemi
Journal:  Chromosome Res       Date:  2017-01-09       Impact factor: 5.239

Review 4.  Visualizing the genome in high resolution challenges our textbook understanding.

Authors:  Melike Lakadamyali; Maria Pia Cosma
Journal:  Nat Methods       Date:  2020-03-02       Impact factor: 28.547

Review 5.  The chromatin fiber: multiscale problems and approaches.

Authors:  Gungor Ozer; Antoni Luque; Tamar Schlick
Journal:  Curr Opin Struct Biol       Date:  2015-06-05       Impact factor: 6.809

6.  Large-scale probabilistic 3D organization of human chromosome territories.

Authors:  Nitasha Sehgal; Andrew J Fritz; Jaromira Vecerova; Hu Ding; Zihe Chen; Branislav Stojkovic; Sambit Bhattacharya; Jinhui Xu; Ronald Berezney
Journal:  Hum Mol Genet       Date:  2015-11-24       Impact factor: 6.150

Review 7.  Chromosome territories and the global regulation of the genome.

Authors:  Andrew J Fritz; Nitasha Sehgal; Artem Pliss; Jinhui Xu; Ronald Berezney
Journal:  Genes Chromosomes Cancer       Date:  2019-03-18       Impact factor: 5.006

Review 8.  Three-dimensional genome architecture: players and mechanisms.

Authors:  Ana Pombo; Niall Dillon
Journal:  Nat Rev Mol Cell Biol       Date:  2015-03-11       Impact factor: 94.444

9.  Loss of lamin A function increases chromatin dynamics in the nuclear interior.

Authors:  I Bronshtein; E Kepten; I Kanter; S Berezin; M Lindner; Abena B Redwood; S Mai; S Gonzalo; R Foisner; Y Shav-Tal; Y Garini
Journal:  Nat Commun       Date:  2015-08-24       Impact factor: 14.919

10.  Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.

Authors:  Mariano Barbieri; Sheila Q Xie; Elena Torlai Triglia; Andrea M Chiariello; Simona Bianco; Inês de Santiago; Miguel R Branco; David Rueda; Mario Nicodemi; Ana Pombo
Journal:  Nat Struct Mol Biol       Date:  2017-04-24       Impact factor: 15.369

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.