Hyok Yoo1, Ekaterina Nagornyak1, Ronnie Das1, Adam D Wexler2, Gerald H Pollack1. 1. Department of Bioengineering, University of Washington , Box 355061, Seattle, Washington 98195, United States. 2. Wetsus Center for Sustainable Water Technology , Agora 1, 8900CC Leeuwarden, The Netherlands.
Abstract
Protein-water interaction plays a crucial role in protein dynamics and hence function. To study the chemical environment of water and proteins with high spatial resolution, synchrotron radiation-Fourier transform infrared (SR-FTIR) spectromicroscopy was used to probe skeletal muscle myofibrils. Observing the OH stretch band showed that water inside of relaxed myofibrils is extensively hydrogen-bonded with little or no free OH. In higher-resolution measurements obtained with single isolated myofibrils, the water absorption peaks were relatively higher within the center region of the sarcomere compared to those in the I-band region, implying higher hydration capacity of thick filaments compared to the thin filaments. When specimens were activated, changes in the OH stretch band showed significant dehydrogen bonding of muscle water; this was indicated by increased absorption at ∼3480 cm-1 compared to relaxed myofibrils. These contraction-induced changes in water were accompanied by splitting of the amide I (C=O) peak, implying that muscle proteins transition from α-helix to β-sheet-rich structures. Hence, muscle contraction can be characterized by a loss of order in the muscle-protein complex, accompanied by a destructuring of hydration water. The findings shed fresh light on the molecular mechanism of muscle contraction and motor protein dynamics.
Protein-water interaction plays a crucial role in protein dynamics and hence function. To study the chemical environment of water and proteins with high spatial resolution, synchrotron radiation-Fourier transform infrared (SR-FTIR) spectromicroscopy was used to probe skeletal muscle myofibrils. Observing the OH stretch band showed that water inside of relaxed myofibrils is extensively hydrogen-bonded with little or no free OH. In higher-resolution measurements obtained with single isolated myofibrils, the water absorption peaks were relatively higher within the center region of the sarcomere compared to those in the I-band region, implying higher hydration capacity of thick filaments compared to the thin filaments. When specimens were activated, changes in the OH stretch band showed significant dehydrogen bonding of muscle water; this was indicated by increased absorption at ∼3480 cm-1 compared to relaxed myofibrils. These contraction-induced changes in water were accompanied by splitting of the amide I (C=O) peak, implying that muscle proteins transition from α-helix to β-sheet-rich structures. Hence, muscle contraction can be characterized by a loss of order in the muscle-protein complex, accompanied by a destructuring of hydration water. The findings shed fresh light on the molecular mechanism of muscle contraction and motor protein dynamics.
While the importance of water
for sustaining life is well-recognized, the exact role of water in
biological processes remains unclear. On the other hand, an increasing
number of studies show that biological processes are heavily influenced
by interfacial water dynamics.[1]One
such water-mediated process is protein conformational change,
which sits at the base of biological function.[2,3] X-ray
crystallography studies had initially implied relatively few hydration
layers adsorbed onto proteins, which could persist even under high
vacuum.[4] However, recent experiments using
THz and fluorescence spectroscopy have reveled that the dynamic hydration
shells around proteins can extend out to much longer distances.[5,6] Further, recent dielectric spectroscopy studies have shown that
protein folding is largely “slaved” by dynamics of water
beyond the first several hydration layers,[7] that is, the protein follows the water.The above-mentioned
studies have sparked broad interest in hydration
water. However, questions remain as to how such solution systems reflect
the intricately ordered and crowded protein–water systems lying
inside of intact tissues and cells. One such ordered system is muscle.
When muscle is activated, proteins undergo synchronous conformational
changes over millimeter and centimeter length scales. The protein
changes are well studied; however, the changes in muscle waterhydrogen
bonding remain uncharted territory.Many experimental observations
imply that water may play an important
role in muscle contraction (for a summary, see refs (8 and 9)). Several recent findings in particular
show that near-surface interfacial water is considerably more viscous
than bulk water, with several groups reporting as high as 6-fold viscosity
elevation near hydrophilic surfaces.[10] This
high viscosity implies that the molecular cross-bridge swinging that
has been considered central to the contractile process may experience
resistance, and correspondingly, that the high energy needed to power
such strokes might not be accounted for by ATP splitting alone.[11] This is but one of multiple issues raised by
the presence of high-viscosity interfacial water.Synchrotron
radiation (SR) FTIR spectromicroscopy has lately emerged
as a noninvasive probe of biological tissues with unprecedented spectral
sensitivity and diffraction-limited spatial resolution, owing to its
high brightness and small beam size.[12] This
tool has proved especially useful in determination of chemical species
and structures.[13−15] IR spectroscopy is also remarkably sensitive to the
strength of hydrogen bonding as OH stretch frequency is linearly related
to hydrogen bonding strength (i.e., stronger hydrogen bonding results
in lower frequency of the OH stretching vibration).[16] With this technique, we examined possible changes of muscle
water and protein structures associated with muscle contraction.In order to compare liquid water with muscle water, we first obtained
the infrared spectrum of liquid water, as shown in Figure 1 (top). The OH stretch region of liquid water shows
a broad peak due to extensive hydrogen bonding. The second derivative
(below) shows that the broad peak resolves into three components,
3230, 3400, and 3620 cm–1 corresponding, respectively,
to the symmetric OH stretching mode of ice-like water, partially hydrogen-bonded
water, and free OH. These are standard assignments. Of the three components,
particularly notable is the one at 3400 cm–1, which
contains two shoulder peaks at 3480 and 3520 cm–1. These shoulder peaks imply that liquid water may have at least
three different arrangements of partially hydrogen-bonded water.
Figure 1
Infrared
spectrum of liquid water at 22 °C in the OH stretch
spectral region (top) and the second-derivative spectrum (bottom).
Arrows indicate components resolved with second-derivative analysis
at 3230, 3400, and 3620 cm–1.
Infrared
spectrum of liquid water at 22 °C in the OH stretch
spectral region (top) and the second-derivative spectrum (bottom).
Arrows indicate components resolved with second-derivative analysis
at 3230, 3400, and 3620 cm–1.To observe the corresponding hydrogen bonding environment
of muscle
water, we collected an infrared map of a single relaxed honeybee myofibril
(Figure 2). Panel (a) shows a bright-field
image, with visible sarcomeres. The color images in panel (b) show
absorption maps obtained at different spectral regions, corresponding
to three components of liquid water determined above, fully coordinated
ice-like water (3230 cm–1), partially H-bonded water
(3400 cm–1), and free OH (3620 cm–1). The strong relative absorptions at 3230 and 3400 cm–1 indicate that the water inside of the relaxed myofibril is mostly
“ice-like” and partially hydrogen-bonded. The weak absorption
at 3620 cm–1 indicates little or no free OH. Hence,
most of the water molecules inside of the relaxed myofibril can be
said to be either fully or partially hydrogen bonded.
Figure 2
(a) Bright-field image
of a single honeybee myofibril in the relaxed
state. (b) IR absorption maps of the same specimen at three wavenumbers,
corresponding to ice-like water (3230 cm–1), partially
hydrogen-bonded water (3400 cm–1), and free OH (3620
cm–1).
(a) Bright-field image
of a single honeybee myofibril in the relaxed
state. (b) IR absorption maps of the same specimen at three wavenumbers,
corresponding to ice-like water (3230 cm–1), partially
hydrogen-bonded water (3400 cm–1), and free OH (3620
cm–1).A particularly interesting feature of these infrared maps
is the
inhomogeneous spatial distribution of water along the myofibril. Overlaying
the images showed that all three components of water IR absorption
were higher in the center of the sarcomere than in the regions around
the z-lines. Of those three components, the ice-like water was preferentially
present in the middle of the sarcomere. The partially hydrogen-bonded
water was spread more uniformly over the length of the myofibril,
albeit slightly higher in the middle of the sarcomere. Thus, the water
content within the myofibril shows sarcomeric periodicity. This may
mean that the thick filaments, which are found in the middle of the
sarcomere, might have higher water holding capacity than the thin
filaments, which are nearer to the ends of the sarcomere. The stronger
absorption of ice-like water may be due to higher negative charge
density on the surfaces of thick filaments compared to that for thin
filaments.[17,18]In order to investigate
the chemical changes associated with contraction,
myofibril bundles were studied in relaxed and activated states. To
simulate two physiological states of muscle, we used a standard model
composed of skinned muscle and two physiological solutions. The bundle
was first bathed in relaxing solution for 30 min, and an IR map was
collected. Next, the same bundle was bathed in activating solution
for 30 min. By that time, the specimen was fully contracted; all visible
signs of contraction development had ceased.Figure 3a shows bright-field images and
superimposed IR maps of the relaxed and activated bundle. The IR maps
were obtained at 3500 cm–1, the spectral region
showing the largest changes as the specimen passed from the relaxed
state to the contracted state. The activated specimen absorbed significantly
more than the relaxed specimen at 3500 cm–1. This
increase may be indicative of decreased hydrogen bonding strength
of muscle water during contraction.
Figure 3
(a) Bright-field images of a relaxed and
activated rabbit psoas
myofibril bundle with overlays of IR images at 3500 cm–1 showing a significant increase in absorption during contraction.
For the color map, the absorption of activated muscle at 3550 cm–1 is normalized to 1 for comparison. (b) IR spectra
of relaxed (blue) and activated (red) muscle and deionized water (green).
(c) Second-derivative spectra of relaxed and activated muscle.
(a) Bright-field images of a relaxed and
activated rabbit psoas
myofibril bundle with overlays of IR images at 3500 cm–1 showing a significant increase in absorption during contraction.
For the color map, the absorption of activated muscle at 3550 cm–1 is normalized to 1 for comparison. (b) IR spectra
of relaxed (blue) and activated (red) muscle and deionized water (green).
(c) Second-derivative spectra of relaxed and activated muscle.Figure 3b shows the representative IR spectra
from relaxed (blue) and activated (red) specimens. Deionized water
(green) is shown for comparison. Consistent with findings in the single
myofibril (Figure 1), the spectra of the relaxed
bundle show almost complete absence of free OH (3620 cm–1) compared to liquid water. This indicates stronger hydrogen bonding
strength of muscle water compared with that of deionized water. The
most notable feature of Figure 3b is the shoulder
peak near 3500 cm–1 that appears upon activation,
indicating “breakup” of the hydrogen bonding network.
However, even with a significant dehydrogen bonding, the activated
muscle still largely lacked free OH. The changes seen in the OH stretch
region of IR spectra upon activation were reversible at least up to
two activate–relax cycles, indicated by the appearance and
disappearance of the a shoulder peak at 3500 cm–1 in activated and relaxed states, respectively.For more detailed
spectral analysis of the OH stretch region, second-derivative
analysis was performed on the original spectra. The results are shown
in Figure 3c. They show several peaks corresponding
to the symmetric and asymmetric CH2 stretches of the lipids
(∼2852 and 2924 cm–1), the asymmetric CH3 stretch of the lipids (2960 cm–1), the
symmetric NH stretch of amide A and amide B (3300 and 3057 cm–1), besides the water peaks (3180, 3400, 3480 cm–1). Table 1 summarizes those
peaks. While other peaks do not show any obvious shifts, the amide
A band shows a blue shift (i.e., to higher frequency) of about 10
cm–1. Such a shift has been associated with an α-helix
to β-sheet transition.[16]
Table 1
Assignment of IR Bands and Their Major
Contributors
wavenumber (cm–1)
vibrational mode assignment and major contribution
∼3620
νOH
of free OH[19]
∼3400
νOH of partially hydrogen-bonded water[19]
∼3300
amide A, νNH of proteins[20]
∼3230
νOH of ice-like water[19]
∼2960
νasCH3 of lipids, proteins and
nucleic acids[20]
∼2924
νasCH2 of
lipids[21]
∼2860
νsCH2 of lipids[21]
∼1650
amide
I, νC=O stretch[20]
∼1550
amide II[20]
In Figure 3c, second-derivative water peaks
are seen corresponding to 3180, 3400, and 3480 cm1. Compared
with liquid water (Figure 1), the component
corresponding to ice-like water occurs at a lower frequency, by about
20 cm–1. This shift indicates that fully coordinated
modes of water in muscle contain slower vibrational modes, presumably
due to dipolar coupling of water and protein oscillators. Upon activation,
the ratio of the amide A peak (3300 cm–1) and the
3480 cm–1 water peak increases, showing an increase
in the number of broken hydrogen bonds per protein molecule. Thus,
the second-derivative analysis confirms the results obtained from
the original spectra, a significant breakup of hydrogen bonds during
activation. The absence of free OH in both relaxed and activated myofibril
bundles shows that the breakup of hydrogen bonding during activation
still leaves water molecules hydrogen-bonded to at least one neighboring
water molecule.To confirm that the observed changes in muscle
water are not artifacts
arising from differences in absorption from the different physiological
solutions, we collected infrared spectra of both activating and relaxing
solutions (Figure S1, Supporting Information). Comparison with the spectra of deionized water confirmed that
both physiological solutions had IR spectra indistinguishable from
that of deionized water.The amide bands in vibrational spectra
of proteins are useful tools
for determining the secondary structure of proteins and the proteins’
stability.[22] Specifically, the amide I
peak provides sensitive information on protein secondary structures
(i.e., α-helix, β-sheets, β-sheet turns, side chains,
etc.).[23] Figure 4a shows representative spectra of the corresponding spectral region
in relaxed (blue) and activated (red) myofibril bundles. These spectra
were taken from the same spectra as Figure3b. In the relaxed state, the myofibril bundle shows a classic amide
I peak centered at ∼1650 cm–1 and an amide
II peak centered at ∼1550 cm–1. Upon activation,
the amide I peak splits into two (Figure 4a),
the new peak appearing at ∼1600 cm–1, over
and above the original peak at ∼1650 cm–1. Moreover, the centroid of the 1650 cm–1 peak
is red-shifted to lower frequency by about 15 cm–1. While detailed theoretical description of amide I splitting has
posed significant challenges, experimental results indicate that splitting
of the amide I peak to lower frequency is associated with β-sheet-rich
structures.[24] Thus, the red shifting of
the 1650 cm–1 peak centroid indicates the formation
of intermolecular β-sheets arising out of aggregation of unfolded
proteins in activated muscle. The new peak appearing in the amide
I region at ∼1600 cm–1 is assigned to the
amino acid side chains of proteins including both hydrogenated and
hydroxylated glutamine (H-Gly and OH-Gly), whose transport plays an
important role in phosphorylation of muscle and contraction.[20,25] Thus, increased absorption at ∼1600 cm–1 seen here may be due to formation of side chains during contraction.
Contrary to the amide I band, the amide II band showed less change
with activation: diminished absorbance, with no change in the peak
location.
Figure 4
(a) IR spectra of a relaxed (blue) and activated (red) myofibril
bundle in amide I and II spectral regions. (b) Second derivative of
the IR spectra.
(a) IR spectra of a relaxed (blue) and activated (red) myofibril
bundle in amide I and II spectral regions. (b) Second derivative of
the IR spectra.To examine these spectral
features in more detail, we looked at
the second-derivative spectra. Figure 4b shows
the second derivative of the original spectra in the amide I and II
region. Several features are of interest. First, the relaxed muscle
has markedly higher composition of α-helix (1652 cm–1) than activated muscle. Second, the peaks centered at ∼1630
and ∼1680 cm–1 increased significantly in
amplitude when muscle went from relaxed to activated. These peaks
represent β-sheets and β-turns, respectively.[20] Taken together, these findings show that muscle
proteins lost helical order during activation, similar to the conclusions
drawn earlier from X-ray diffraction studies.[26]The activation-associated changes of muscle water are appreciable
(Figure 2b). However, the myofibril bundle
contains water both inside of the myofibril and between the myofibrils.
To ensure that the observed changes in hydrogen bonding are indeed
due to changes within the myofibrils, that is, associated with myosin,
actin, and so forth, we probed single myofibrils, where the only water
present in the sample lies within the contractile apparatus. Contraction
is ordinarily less pronounced in honeybee myofibrils but was confirmed
by monitoring shortening of sarcomeres in bright-field images. The
statistics are summarized in Figure S2 (Supporting
Information).The results obtained with the single myofibril
(Figure 5) largely concur with those obtained
with the myofibril
bundles (Figure 4). As seen with rabbit myofibril
bundles (Figure 3b), the representative spectrum
of relaxed single myofibril shows an OH stretch peak significantly
red-shifted from that of deionized water. This shift indicates stronger
hydrogen bonding than liquid water. Moreover, as the specimen passed
from relaxed (blue) to activated (red), the hydrogen bonding strength
decreased, as indicated by a ∼25 cm–1 blue
shifting of the centroid of the water OH stretch peak. The dehydrogen
bonding agrees with results obtained from myofibril bundles. Hence,
the major findings in muscle waterhydrogen bonding are consistent
in both single myofibrils and myofibril bundles, indicating that those
changes occur within the actomyosin complex.
Figure 5
IR spectra of a relaxed
(blue) and activated single myofibril (red).
The IR spectrum of liquid water is shown for comparison (green).
IR spectra of a relaxed
(blue) and activated single myofibril (red).
The IR spectrum of liquid water is shown for comparison (green).This study was carried out to
understand the chemical environment
of skeletal muscle water and its possible role in contraction. Our
results show that water in relaxed muscle is significantly more structured
than bulk water, with little or no free OH present. This was found
inside of myofibril bundles as well as inside of single myofibrils.
The most notable result of this study was the sensitivity of the waterhydrogen bonding environment to distinct physiological states. When
the myofibril was activated, the well-hydrogen-bonded muscle water
lost order as the muscle proteins changed conformation. Water evidently
plays some role in the contractile process.It is widely believed
that water inside of biological tissues is
similar to bulk water, except for the first two or three protein hydration
layers. However, more recent results have shown that hydrophilic surfaces
can extensively order nearby water.[27−29] Further, recent NMR
measurements show that in confined geometries such as inside of reverse
micelles, protein hydration shells can extend out to several dozens
of layers.[30] Considering the confined geometry
inside of the myofilament lattice, it is no surprise that most of
the muscle water is well-structured. Thus, muscle water differs substantially
from bulk water.While modern understanding of muscle contraction
is largely dominated
by the cross-bridge theory originally proposed by Sir Andrew Huxley
and H. E. Huxley,[31,32] many experimental results remain
at odds with that theory. The most notable are shortening of thick
filaments during contraction[33] and generation
of force even with no apparent overlap of thick and thin filaments,[34] where no attachment of myosin heads to actin
filaments can occur. Both findings indicate the need for reconsideration
of that mechanism.[9,35] On the other hand, the breakup
of water structure during contraction implies that the high viscosity
issue mentioned above may be less of a problem for the prevailing
theory than initially considered. If the water remained highly viscous,
not only could cross-bridges fail to swing, but also, any kind of
filamentary motion might confront substantial difficulty.Several
physical changes occur immediately following stimulation
but prior to force generation. These include changes in thick filament
length,[33] sudden decreases in viscoelasticity,[36] loss of axial and helical order in myosin,[37] and latency relaxation.[38] All of those changes occur within milliseconds after stimulation
and well before the onset of force generation. While these changes
are seemingly necessary preconditions for force generation, their
mechanisms have remained unclear. Changes in water structure might
potentially explain some or all of those changes and help provide
better understanding of the molecular mechanism of muscle contraction.Given the breakup of water structure during contraction, a lingering
question is which of the two events comes first, changes in protein
conformation or breakup of ordered hydration water. Time-resolved
studies will be needed to answer this important question, which may
have relevance also for other biological systems.
Methods
Solutions. Several different solutions were used
to simulate different states of contraction. Relaxing solution (pH
7.0) had a composition (in mM) of 10 MOPS, 64.4 K+ propionate,
5.23 Mg2+ propionate, 9.45 Na2SO4, 10 EGTA, 0.188 CaCl2, 7 ATP, and 10 creatine phosphate.
Activating solution consisted (in mM) of 10 MOPS, 45.1 K+ propionate, 5.21 Mg2+ propionate, 9.27 Na2SO4, 10 EGTA, 9.91 CaCl2, 7.18 ATP, and 10
creatine phosphate. Glycerol solution consisted of half glycerol and
half rigor solution, the latter containing (in mM) 50 Tris (pH 7.4),
100 NaCl, 2 KCl, 2 MgCl2, and 10 EGTA.Skeletal
Myofibril Preparation. Two types of specimens
were studied, myofibril bundles and single myofibrils. Myofibril bundles
were prepared from rabbit psoas muscles. Briefly, muscles were dissected
bluntly from the backs of rabbits, along the length of the fibers.
They were cut into thin strips and tied at both ends to a wooden stick
in order to maintain their natural length. The prepared muscle strips
were placed in glycerol solution and stored in a freezer at −20
°C for long-term storage. To obtain myofibril bundles, the muscle
strips stored in glycerol solution were transferred to rigor solution
for 60 min and then cut into 2 mm segments across the fiber cross
section. A tissue segment was diced using a blender (Sorvall Omni
Mixer) in 7 mL of rigor solution using the following protocol: twice
× 5 s at 1100 rpm, once × 5 s at 2500 rpm, and once ×
1 s at 3100 rpm. The resulting myofibril bundles were typically about
50 μm in diameter and several hundred micrometers long. Eight
myofibril bundles were probed both in relaxed and activated states
to confirm the consistency of the data (n = 8).Single honeybee myofibrils were prepared from the thorax region
of honeybee flight muscles. The dissected specimen was stored at −20
°C in a 50/50 glycerol/rigor solution mixture for long-term storage.
To prepare single myofibrils, the muscle tissue was washed in rigor
solution and cut using a blender in 2 mL of rigor solution using the
following protocol: once × 5 s at 2500 rpm and once × 10
s at 4000 rpm. The resulting myofibrils were typically 4–5
μm in diameter and tens of micrometers long. Ten single myofibril
samples were probed in both activated and relaxed states for consistency
(n = 10).Synchrotron Radiation Fourier
Transform Infrared (SR-FTIR)
Spectromicroscopy. The SR-FTIR measurements were made using
a Nicolet Magna 760 FTIR bench and a Nicolet Nic-Plan IR microscope
with 15× and 32× objectives, at the Advanced Light Source,
Lawrence Berkeley National Laboratory, Infrared Beamline 1.4.3. Myofibril
bundle experiments were carried out with a 15× objective, while
single myofibril experiments were carried out using a 32× objective.
Thirty-two scans of IR spectra were collected between 800 and 4000
cm–1 at 4 cm–1 resolution and
averaged. SR-FTIR spectra were initially collected to identify the
chemical environment of relaxed muscle. To do this, a drop of myofibril
bundle suspension was dispensed onto a CaF2 window and
then immersed in relaxing solution for 30 min on ice. To collect the
SR-FTIR spectra of activated muscle, activating solution was drop
dispensed onto the myofibril bundle, and measurements were made after
the specimen had visibly finished contracting. For obtaining spectral
maps of myofibril bundles, a total of eight myofibril bundles were
probed in both relaxed and activated states for consistency. Each
sample was scanned with a 5 μm step size. For single honeybee
myofibrils, 13 myofibrils were probed in both relaxed and activated
states. Each sample was scanned with a 1 μm step size. Second-derivative
analysis was performed for enhancement of spectral resolution using
the Savitsky–Golay method.[39] To
minimize evaporation during data collection, the myofibril bundle
was kept in a water-tight custom chamber with a Tefon fitting.
Authors: Simon Ebbinghaus; Seung Joong Kim; Matthias Heyden; Xin Yu; Udo Heugen; Martin Gruebele; David M Leitner; Martina Havenith Journal: Proc Natl Acad Sci U S A Date: 2007-12-19 Impact factor: 11.205
Authors: Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young Journal: Proc Natl Acad Sci U S A Date: 2009-02-27 Impact factor: 11.205