Literature DB >> 24802184

Accurate description of calcium solvation in concentrated aqueous solutions.

Miriam Kohagen1, Philip E Mason, Pavel Jungwirth.   

Abstract

Calcium is one of the biologically most important ions; however, its accurate description by classical molecular dynamics simulations is complicated by strong electrostatic and polarization interactions with surroundings due to its divalent nature. Here, we explore the recently suggested approach for effectively accounting for polarization effects via ionic charge rescaling and develop a new and accurate parametrization of the calcium dication. Comparison to neutron scattering and viscosity measurements demonstrates that our model allows for an accurate description of concentrated aqueous calcium chloride solutions. The present model should find broad use in efficient and accurate modeling of calcium in aqueous environments, such as those encountered in biological and technological applications.

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Year:  2014        PMID: 24802184     DOI: 10.1021/jp5005693

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  15 in total

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Authors:  Ang Gao; Richard C Remsing; John D Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-07       Impact factor: 11.205

3.  Comparison of structural, thermodynamic, kinetic and mass transport properties of Mg(2+) ion models commonly used in biomolecular simulations.

Authors:  Maria T Panteva; George M Giambaşu; Darrin M York
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4.  The complex nature of calcium cation interactions with phospholipid bilayers.

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5.  EDTA aggregates induce SYPRO orange-based fluorescence in thermal shift assay.

Authors:  Tobias Kroeger; Benedikt Frieg; Tao Zhang; Finn K Hansen; Andreas Marmann; Peter Proksch; Luitgard Nagel-Steger; Georg Groth; Sander H J Smits; Holger Gohlke
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6.  Experimental measurements of water molecule binding energies for the second and third solvation shells of [Ca(H2O) n ]2+ complexes.

Authors:  E Bruzzi; A J Stace
Journal:  R Soc Open Sci       Date:  2017-01-04       Impact factor: 2.963

7.  Opposing Intermolecular Tuning of Ca2+ Affinity for Calmodulin by Neurogranin and CaMKII Peptides.

Authors:  Pengzhi Zhang; Swarnendu Tripathi; Hoa Trinh; Margaret S Cheung
Journal:  Biophys J       Date:  2017-03-28       Impact factor: 4.033

8.  Computing Spatiotemporal Heat Maps of Lipid Electropore Formation: A Statistical Approach.

Authors:  Willy Wriggers; Federica Castellani; Julio A Kovacs; P Thomas Vernier
Journal:  Front Mol Biosci       Date:  2017-04-25

9.  Coupling all-atom molecular dynamics simulations of ions in water with Brownian dynamics.

Authors:  Radek Erban
Journal:  Proc Math Phys Eng Sci       Date:  2016-02       Impact factor: 2.704

10.  The Ca2+ permeation mechanism of the ryanodine receptor revealed by a multi-site ion model.

Authors:  Aihua Zhang; Hua Yu; Chunhong Liu; Chen Song
Journal:  Nat Commun       Date:  2020-02-17       Impact factor: 14.919

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