Literature DB >> 24801645

Ciliates and the rare biosphere: a review.

Micah Dunthorn1, Thorsten Stoeck, John Clamp, Alan Warren, Frédéric Mahé.   

Abstract

Here we provide a brief review of the rare biosphere from the perspective of ciliates and other microbial eukaryotes. We trace research on rarity from its lack of much in-depth focus in morphological and Sanger sequencing projects, to its central importance in analyses using high throughput sequencing strategies. The problem that the rare biosphere is potentially comprised of mostly errors is then discussed in the light of asking community-comparative, novel-diversity, and ecosystem-functioning questions.
© 2014 The Author(s) Journal of Eukaryotic Microbiology © 2014 International Society of Protistologists.

Keywords:  Abundance; Ciliophora; biogeography; diversity; environmental diversity; rarity

Mesh:

Year:  2014        PMID: 24801645     DOI: 10.1111/jeu.12121

Source DB:  PubMed          Journal:  J Eukaryot Microbiol        ISSN: 1066-5234            Impact factor:   3.346


  9 in total

1.  Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds.

Authors:  Sabine Filker; Anna Gimmler; Micah Dunthorn; Frédéric Mahé; Thorsten Stoeck
Journal:  Extremophiles       Date:  2014-12-04       Impact factor: 2.395

2.  Common and Rare Taxa of Planktonic Ciliates: Influence of Flood Events and Biogeographic Patterns in Neotropical Floodplains.

Authors:  Bianca Trevizan Segovia; Juliana Déo Dias; Adalgisa Fernanda Cabral; Bianca Ramos Meira; Fernando Miranda Lansac-Tôha; Fabio Amodêo Lansac-Tôha; Luis Mauricio Bini; Luiz Felipe Machado Velho
Journal:  Microb Ecol       Date:  2017-04-06       Impact factor: 4.552

3.  Strengths and Biases of High-Throughput Sequencing Data in the Characterization of Freshwater Ciliate Microbiomes.

Authors:  Vittorio Boscaro; Alessia Rossi; Claudia Vannini; Franco Verni; Sergei I Fokin; Giulio Petroni
Journal:  Microb Ecol       Date:  2016-12-28       Impact factor: 4.552

4.  Declines in both redundant and trace species characterize the latitudinal diversity gradient in tintinnid ciliates.

Authors:  John R Dolan; Eun Jin Yang; Sung-Ho Kang; Tae Siek Rhee
Journal:  ISME J       Date:  2016-03-18       Impact factor: 10.302

5.  Comparison of three clustering approaches for detecting novel environmental microbial diversity.

Authors:  Dominik Forster; Micah Dunthorn; Thorsten Stoeck; Frédéric Mahé
Journal:  PeerJ       Date:  2016-02-25       Impact factor: 2.984

6.  Marked seasonality and high spatial variation in estuarine ciliates are driven by exchanges between the 'abundant' and 'intermediate' biospheres.

Authors:  Ping Sun; Liying Huang; Dapeng Xu; Bangqin Huang; Nengwang Chen; Alan Warren
Journal:  Sci Rep       Date:  2017-08-25       Impact factor: 4.379

7.  A Case Study of the Morphological and Molecular Variation within a Ciliate Genus: Taxonomic Descriptions of Three Dysteria Species (Ciliophora, Cyrtophoria), with the Establishment of a New Species.

Authors:  Xuetong Zhao; Hui Zhang; Qianqian Zhang; Zhishuai Qu; Alan Warren; Di Wu; Xiangrui Chen
Journal:  Int J Mol Sci       Date:  2022-02-03       Impact factor: 5.923

8.  Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms.

Authors:  Dominik Forster; Lucie Bittner; Slim Karkar; Micah Dunthorn; Sarah Romac; Stéphane Audic; Philippe Lopez; Thorsten Stoeck; Eric Bapteste
Journal:  BMC Biol       Date:  2015-02-24       Impact factor: 7.431

Review 9.  Ecology of planktonic ciliates in a changing world: Concepts, methods, and challenges.

Authors:  Thomas Weisse; David J S Montagnes
Journal:  J Eukaryot Microbiol       Date:  2021-12-22       Impact factor: 3.880

  9 in total

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