Literature DB >> 24798873

Sequence and comparison of mitochondrial genomes in the genus Nerita (Gastropoda: Neritimorpha: Neritidae) and phylogenetic considerations among gastropods.

Moises Arquez1, Donald Colgan2, Lyda R Castro3.   

Abstract

In the present study, we determined the mitochondrial DNA (mtDNA) sequence of three Neritas, Nerita versicolor, Nerita tessellata, and Nerita fulgurans. We present an analysis of the features of their gene content and genome organization and compare these within the genus Nerita, and among the main gastropod groups. The new sequences were used in a phylogenetic analysis including all available gastropod mitochondrial genomes. Genomic lengths were quite conserved, being 15,866bp for N. versicolor, 15,741bp for N. tessellata and 15,343bp for N. fulgurans. Intergenic regions were generally short; genes are transcribed from both strands and have a nucleotide composition high in A and T. The high similarity in nucleotide content of the different sequences, gene composition, as well as an identical genomic organization among the Nerita species compared in this study, indicates a high degree of conservation within this diverse genus. Values ​​of Ka/Ks of the 13 protein coding genes (PCGs) of Nerita species ranged from 0 to 0.18, and suggested different selection pressures in gene sequences. Bayesian phylogenetic analyses using concatenated DNA sequences of the 13 PCGs and the two rRNAs, and of amino acid sequences strongly supported Neritimorpha and Vetigastropoda as sister groups.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Ka/Ks; Nerita fulgurans; Nerita tessellata; Nerita versicolor; mt genome rearrangements; mtDNA

Mesh:

Substances:

Year:  2014        PMID: 24798873     DOI: 10.1016/j.margen.2014.04.007

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  9 in total

1.  Sequence comparison of the mitochondrial genomes of five brackish water species of the family Neritidae: Phylogenetic implications and divergence time estimation.

Authors:  Jing Miao; Jiantong Feng; Xiaojuan Liu; Chengrui Yan; Yingying Ye; Jiji Li; Kaida Xu; Baoying Guo; Zhenming Lü
Journal:  Ecol Evol       Date:  2022-06-06       Impact factor: 3.167

2.  Characterization of four mitochondrial genomes of family Neritidae (Gastropoda: Neritimorpha) and insight into its phylogenetic relationships.

Authors:  Jian-Tong Feng; Li-Ping Xia; Cheng-Rui Yan; Jing Miao; Ying-Ying Ye; Ji-Ji Li; Bao-Ying Guo; Zhen-Ming Lü
Journal:  Sci Rep       Date:  2021-06-03       Impact factor: 4.379

3.  Complete Mitochondrial Genomes of Two Toxin-Accumulated Nassariids (Neogastropoda: Nassariidae: Nassarius) and Their Implication for Phylogeny.

Authors:  Yi Yang; Hongyue Liu; Lu Qi; Lingfeng Kong; Qi Li
Journal:  Int J Mol Sci       Date:  2020-05-17       Impact factor: 5.923

4.  Comparative Characterization of the Complete Mitochondrial Genomes of the Three Apple Snails (Gastropoda: Ampullariidae) and the Phylogenetic Analyses.

Authors:  Huirong Yang; Jia-En Zhang; Jun Xia; Jinzeng Yang; Jing Guo; Zhixin Deng; Mingzhu Luo
Journal:  Int J Mol Sci       Date:  2018-11-19       Impact factor: 5.923

5.  Complete Mitogenome of a Leaf-Mining Buprestid Beetle, Trachys auricollis, and Its Phylogenetic Implications.

Authors:  Lifang Xiao; Shengdi Zhang; Chengpeng Long; Qingyun Guo; Jiasheng Xu; Xiaohua Dai; Jianguo Wang
Journal:  Genes (Basel)       Date:  2019-12-01       Impact factor: 4.096

6.  Mitogenomic phylogenetic analyses of Leptogorgia virgulata and Leptogorgia hebes (Anthozoa: Octocorallia) from the Gulf of Mexico provides insight on Gorgoniidae divergence between Pacific and Atlantic lineages.

Authors:  Samantha Silvestri; Diego F Figueroa; David Hicks; Nicole J Figueroa
Journal:  Ecol Evol       Date:  2019-11-21       Impact factor: 2.912

7.  The mitochondrial genome and phylogenetic position of a marine snail Nerita (Heminerita) japonica (Gastropoda: Neritimorpha: Neritidae).

Authors:  Hiroaki Fukumori; Hajime Itoh; Nobuyoshi Nakajima; Yasunori Kano
Journal:  Mitochondrial DNA B Resour       Date:  2020-10-21       Impact factor: 0.658

8.  How many single-copy orthologous genes from whole genomes reveal deep gastropod relationships?

Authors:  Zeyuan Chen; Michael Schrödl
Journal:  PeerJ       Date:  2022-04-18       Impact factor: 3.061

9.  Insights into the Deep Phylogeny and Novel Divergence Time Estimation of Patellogastropoda from Complete Mitogenomes.

Authors:  Jiantong Feng; Jing Miao; Yingying Ye; Jiji Li; Kaida Xu; Baoying Guo; Xiaojun Yan
Journal:  Genes (Basel)       Date:  2022-07-18       Impact factor: 4.141

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.