Literature DB >> 24793419

Comment on "Modulating DNA configuration by interfacial traction: an elastic rod model to characterize DNA folding and unfolding".

Yongzhao Wang1, Qichang Zhang, Wei Wang.   

Abstract

In this comment, we point out that the tractions induced by interfacial energy, which are referred to as the tractions on the central axis curve of the DNA elastic rod presented by Huang (J. Biol. Phys. 37(1), 79-90, 2011), are incorrect. The correct tractions are provided in this literature. Further, with the use of the correct tractions, we present new numerical results, which for the values given by Zaixing Huang do not give rise to the physical behavior observed for DNA by the author.

Year:  2014        PMID: 24793419      PMCID: PMC4059836          DOI: 10.1007/s10867-014-9345-0

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  6 in total

1.  Modulating DNA configuration by interfacial traction: an elastic rod model to characterize DNA folding and unfolding.

Authors:  Zaixing Huang
Journal:  J Biol Phys       Date:  2010-09-02       Impact factor: 1.365

2.  Torque-induced deformations of charged elastic DNA rods: thin helices, loops, and precursors of DNA supercoiling.

Authors:  Andrey G Cherstvy
Journal:  J Biol Phys       Date:  2011-01-18       Impact factor: 1.365

3.  Chiral electrostatics breaks the mirror symmetry of DNA supercoiling.

Authors:  R Cortini; D J Lee; A Kornyshev
Journal:  J Phys Condens Matter       Date:  2012-04-25       Impact factor: 2.333

Review 4.  DNA mechanics.

Authors:  Craig J Benham; Steven P Mielke
Journal:  Annu Rev Biomed Eng       Date:  2005       Impact factor: 9.590

5.  A computational framework for mechanical response of macromolecules: application to the salt concentration dependence of DNA bendability.

Authors:  Liang Ma; Arun Yethiraj; Xi Chen; Qiang Cui
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

6.  A constant radius of curvature model for the organization of DNA in toroidal condensates.

Authors:  N V Hud; K H Downing; R Balhorn
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-11       Impact factor: 11.205

  6 in total

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