| Literature DB >> 24790447 |
Jun Yao1, Mei Ding1, Jiaxin Xing1, Jinfeng Xuan1, Hao Pang1, Yuqing Pan1, Baojie Wang1.
Abstract
OBJECTIVE: Dysregulation of dopaminergic neurotransmission at the D1 receptor in the prefrontal cortex has been implicated in the pathogenesis of schizophrenia. Genetic polymorphisms of the dopamine D1-receptor gene have a plausible role in modulating the risk of schizophrenia. To determine the role of DRD1 genetic polymorphisms as a risk factor for schizophrenia, we undertook a case-control study to look for an association between the DRD1 gene and schizophrenia.Entities:
Keywords: association; dopamine D1 receptor; genetic polymorphism; paranoid schizophrenic; single-nucleotide study
Year: 2014 PMID: 24790447 PMCID: PMC4000248 DOI: 10.2147/NDT.S61227
Source DB: PubMed Journal: Neuropsychiatr Dis Treat ISSN: 1176-6328 Impact factor: 2.570
Figure 1Schematic diagram of the distribution of eleven SNP loci in the DRD1 gene.
Abbreviations: CDS, coding sequence; SNP, single nucleotide polymorphism; ATG, transcription start site; STOP, stop codon.
Figure 2Linkage-disequilibrium diagram of eleven single-nucleotide polymorphism loci in DRD1. The top row represents the disease group, while the bottom shows the control group; the left is r2, and the right is D′. The black grid represents r2=1; the blank grid represents D′=1.
Distribution of genotype frequencies, allele frequencies, and disease risk at the eleven SNP loci in DRD1 for the control and disease groups
| Variable | Cases (n=173)
| Control (n=213)
| OR, 95% CI | |||
|---|---|---|---|---|---|---|
| n | % | n | % | |||
| 0.328 | ||||||
| AA | 43 | 24.9 | 59 | 27.7 | 1 | |
| AC | 69 | 39.9 | 94 | 44.1 | 1.007, 0.610–1.662 | |
| CC | 61 | 35.3 | 60 | 28.2 | 1.395, 0.821–2.371 | |
| AC + CC | 130 | 75.2 | 154 | 72.3 | 0.529 | 1.158, 0.733–1.829 |
| Per C allele | 191 | 55.2 | 214 | 50.2 | 0.169 | 1.221, 0.918–1.623 |
| 0.984 | ||||||
| AA | 97 | 56.1 | 120 | 56.3 | 1 | |
| AG | 63 | 36.4 | 78 | 36.6 | 0.999, 0.652–1.531 | |
| GG | 13 | 7.5 | 15 | 7.0 | 1.072, 0.487–2.361 | |
| AG + GG | 76 | 43.9 | 93 | 43.6 | 0.958 | 1.011, 0.675–1.515 |
| Per G allele | 89 | 73.6 | 108 | 69.8 | 0.907 | 1.020, 0.737–1.412 |
| 0.157 | ||||||
| GG | 95 | 54.9 | 118 | 55.4 | 1 | |
| GT | 73 | 42.2 | 80 | 37.6 | 1.133, 0.747–1.719 | |
| TT | 5 | 2.9 | 15 | 7.0 | 0.414, 0.145–1.180 | |
| GT + TT | 78 | 45.1 | 95 | 44.6 | 0.924 | 1.020, 0.681–1.526 |
| Per T allele | 83 | 24.0 | 110 | 25.8 | 0.559 | 0.907, 0.653–1.259 |
| 0.899 | ||||||
| AA | 99 | 57.2 | 119 | 55.9 | 1 | |
| AG | 63 | 36.4 | 78 | 36.6 | 0.971, 0.634–1.486 | |
| GG | 11 | 6.4 | 16 | 7.5 | 0.826, 0.367–1.863 | |
| AG + GG | 74 | 42.8 | 94 | 44.1 | 0.789 | 0.946, 0.631–1.418 |
| Per G allele | 85 | 24.6 | 110 | 25.8 | 0.690 | 0.936, 0.675–1.298 |
| 0.374 | ||||||
| AA | 0 | 0.0 | 0 | 0.0 | 1 | |
| AG | 12 | 6.9 | 8 | 3.8 | 1.910, 0.763–4.783 | |
| GG | 161 | 93.1 | 205 | 96.2 | – | |
| AG + GG | 173 | 100.0 | 213 | 100.0 | – | – |
| Per G allele | 334 | 96.5 | 418 | 98.1 | 0.167 | 0.533, 0.215–1.318 |
| 0.265 | ||||||
| CC | 2 | 1.2 | 0 | 0.0 | 1 | |
| CG | 20 | 11.6 | 28 | 13.1 | – | |
| GG | 151 | 87.3 | 185 | 86.9 | – | |
| CG + GG | 171 | 98.9 | 213 | 100.0 | 0.116 | – |
| Per G allele | 322 | 93.1 | 398 | 93.4 | 0.841 | 0.944, 0.537–1.660 |
| 0.632 | ||||||
| TT | 159 | 91.9 | 201 | 94.4 | 1 | |
| TC | 14 | 8.1 | 12 | 5.6 | 1.475, 0.664–3.278 | |
| CC | 0 | 0.0 | 0 | 0.0 | – | |
| TC + CC | 14 | 8.1 | 12 | 5.6 | 0.338 | 1.475, 0.664–3.278 |
| Per C allele | 14 | 4.0 | 12 | 2.8 | 0.346 | 1.455, 0.664–3.188 |
| 0.074 | ||||||
| AA | 1 | 0.6 | 0 | 0.0 | 1 | |
| AG | 25 | 14.5 | 48 | 22.5 | – | |
| GG | 147 | 85.0 | 165 | 77.5 | – | |
| AG + GG | 172 | 99.5 | 213 | 100.0 | 0.267 | – |
| Per G allele | 319 | 92.2 | 378 | 88.7 | 0.106 | 1.500, 0.915–2.460 |
| 0.995 | ||||||
| AA | 0 | 0.0 | 0 | 0.0 | 1 | |
| AC | 6 | 3.5 | 7 | 3.3 | 1.057, 0.349–3.206 | |
| CC | 167 | 96.5 | 206 | 96.7 | – | |
| AC + CC | 173 | 100.0 | 213 | 100.0 | 1.000 | – |
| Per C allele | 340 | 98.3 | 419 | 98.4 | 0.992 | 0.947, 0.315–2.843 |
| 0.036 | ||||||
| AA | 17 | 9.8 | 8 | 3.8 | 1 | |
| AG | 64 | 37.0 | 94 | 44.1 | 0.320, 0.130–0.787 | |
| GG | 92 | 53.2 | 111 | 52.1 | 0.390, 0.161–0.945 | |
| AG + GG | 156 | 90.2 | 205 | 96.2 | 0.016 | 0.358, 0.151–0.851 |
| Per G allele | 248 | 71.7 | 316 | 74.2 | 0.436 | 0.881, 0.640–1.212 |
| 0.060 | ||||||
| TT | 147 | 85.0 | 164 | 77.0 | 1 | |
| TC | 25 | 14.5 | 49 | 23.0 | 0.569, 0.335–0.968 | |
| CC | 1 | 0.6 | 0 | 0.0 | – | |
| TC + CC | 26 | 15.1 | 49 | 23.0 | 0.049 | 0.592, 0.350–1.001 |
| Per C allele | 27 | 7.8 | 49 | 11.5 | 0.086 | 1.536, 0.938–2.514 |
Notes:
P-values calculated by 2×3 and 2×2 χ2 tests (for codominant, dominant for minor allele, and allele model), with P<0.05 statistically significant. Due to the small number of genotypes of several SNPs or missing data, statistical values that could not be calculated are represented by solo en dashes.
Abbreviations: SNP, single-nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Haplotypes formed by the seven SNP loci in DRD1 and disease risk
| Haplotype | SNP
| Cases | Controls | OR, 95% CI | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs4532 | rs5326 | rs193082222 | rs265981 | rs201089398 | rs35916350 | rs146439723 | n | % | n | % | |||
| 1 | A | G | G | C | T | G | C | 197 | 56.9 | 241 | 56.5 | 0.919 | 1.015, 0.762–1.351 |
| 2 | A | A | G | C | T | G | C | 67 | 19.4 | 84 | 19.7 | 0.902 | 0.978, 0.684–1.398 |
| 3 | G | G | G | T | T | G | C | 26 | 7.6 | 48 | 11.3 | 0.078 | 0.640, 0.388–1.055 |
| 4 | A | A | G | C | T | C | C | 24 | 6.9 | 26 | 6.0 | 0.640 | 1.147, 0.646–2.036 |
Note: Haplotype with frequency <0.05 were excluded.
Abbreviations: SNP, single-nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Haplotypes formed by the remaining four SNP loci in DRD1 and disease risk
| Haplotype | SNP
| Cases | Controls | OR, 95% CI | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| rs10078714 | rs10063995 | rs10078866 | rs267410 | n | % | n | % | |||
| 1 | T | C | T | T | 163 | 47.2 | 177 | 41.5 | 0.122 | 1.253, 0.942–1.668 |
| 2 | T | C | T | G | 80 | 23.2 | 120 | 28.2 | 0.111 | 0.767, 0.553–1.064 |
| 3 | C | A | C | G | 69 | 19.9 | 91 | 21.4 | 0.629 | 0.917, 0.646–1.303 |
Note: Haplotype with frequency <0.05 were excluded.
Abbreviations: SNP, single-nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Distribution of genotype frequency and disease risk at two SNP loci in DRD1 for sex in control and disease groups
| Variable | rs5326 (cases/controls)
| OR, 95% CI | rs4532 (cases/controls)
| OR, 95% CI | ||||
|---|---|---|---|---|---|---|---|---|
| AA | AG + GG | TT | TC + CC | |||||
| Male | 8/3 | 80/109 | 0.048 | 0.275, 0.071–1.070 | 73/89 | 15/23 | 0.532 | 0.795, 0.387–1.634 |
| Female | 9/5 | 76/96 | 0.147 | 0.440, 0.142–1.367 | 74/75 | 11/26 | 0.029 | 0.429, 0.198–0.930 |
Abbreviations: SNP, single-nucleotide polymorphism; OR, odds ratio; CI, confidence interval.