Literature DB >> 24783797

Loop-mediated isothermal amplification of DNA (LAMP): a new diagnostic tool lights the world of diagnosis of animal and human pathogens: a review.

Kuldeep Dhama, K Karthik, Sandip Chakraborty, Ruchi Tiwari, Sanjay Kapoor, Amit Kumar, Prasad Thomas.   

Abstract

Diagnosis is an important part in case of animal husbandry as treatment of a disease depends on it. Advancement in molecular biology has generated various sophisticated tools like Polymerase Chain Reaction (PCR), its versions along with pen-side diagnostic techniques. Every diagnostic test however has both advantages and disadvantages; PCR is not an exception to this statement. To ease the odds faced by PCR several non-PCR techniques which can amplify DNA at a constant temperature has become the need of hour, thus generating a variety of isothermal amplification techniques including Nucleic Acid Sequence-Based Amplification (NASBA) along with Self-Sustained Sequence Replication (3SR) and Strand Displacement Amplification (SDA) and Loop mediated isothermal amplification (LAMP) test. LAMP stands out to be a good and effective diagnostic test for empowering in developing countries as it does not require sophisticated equipments and skilled personnel and proves to be cost-effective. Performance of LAMP mainly relies on crafting of six primers (including 2 loop primers) ultimately accelerating the reaction. LAMP amplifies DNA in the process pyrophosphates are formed causing turbidity that facilitates visualisation in a more effective way than PCR. The Bst and Bsm polymerase are the required enzymes for LAMP that does not possess 5'-3' exonuclease activity. Results can be visualized by adding DNA binding dye, SYBR green. LAMP is more stable than PCR and real-time PCR. Non-involvement of template DNA preparation and ability to generate 10(9) copies of DNA are added benefits that make it more effective than NASBA or 3SR and SDA. Thus, it fetches researcher's interest in developing various versions of LAMP viz., its combination with lateral flow assay or micro LAMP and more recently lyophilized and electric (e) LAMP. Availability of ready to use LAMP kits has helped diagnosis of almost all pathogens. LAMP associated technologies however needs to be developed as a part of LAMP platform rather than developing them as separate entities. This review deals with all these salient features of this newly developed tool that has enlightened the world of diagnosis.

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Year:  2014        PMID: 24783797     DOI: 10.3923/pjbs.2014.151.166

Source DB:  PubMed          Journal:  Pak J Biol Sci        ISSN: 1028-8880


  41 in total

1.  Development of Reverse Transcription Loop-Mediated Isothermal Amplification for Simple and Rapid Detection of Promyelocytic Leukemia-Retinoic Acid Receptor α mRNA.

Authors:  Yuki Hashimoto; Yuki Hatayama; Nao Kojima; Shota Morishita; Satoko Matsumoto; Yuzuru Hosoda; Ayako Hara; Toru Motokura
Journal:  Yonago Acta Med       Date:  2016-12-26       Impact factor: 1.641

2.  Smartphone clip-on instrument and microfluidic processor for rapid sample-to-answer detection of Zika virus in whole blood using spatial RT-LAMP.

Authors:  Aaron M Jankelow; Hankeun Lee; Weijing Wang; Trung-Hieu Hoang; Amanda Bacon; Fu Sun; Seol Chae; Victoria Kindratenko; Katherine Koprowski; Robert A Stavins; Dylann D Ceriani; Zachary W Engelder; William P King; Minh N Do; Rashid Bashir; Enrique Valera; Brian T Cunningham
Journal:  Analyst       Date:  2022-08-22       Impact factor: 5.227

3.  Rapid detection of infectious bursal disease by loop-mediated isothermal amplification for field analysis.

Authors:  R S A Khan; W Ali; S Kiran; M S D Shah; Z A Tahir; M Habib
Journal:  Iran J Vet Res       Date:  2018       Impact factor: 1.376

Review 4.  Advances in diagnosis of respiratory diseases of small ruminants.

Authors:  Sandip Chakraborty; Amit Kumar; Ruchi Tiwari; Anu Rahal; Yash Malik; Kuldeep Dhama; Amar Pal; Minakshi Prasad
Journal:  Vet Med Int       Date:  2014-06-15

5.  Establishment and application of a real-time loop-mediated isothermal amplification system for the detection of CYP2C19 polymorphisms.

Authors:  Chao Zhang; Yao Yao; Juan-Li Zhu; Si-Nong Zhang; Shan-Shan Zhang; Hua Wei; Wen-Li Hui; Ya-Li Cui
Journal:  Sci Rep       Date:  2016-06-01       Impact factor: 4.379

6.  Combination with antimicrobial peptide lyses improves loop-mediated isothermal amplification based method for Chlamydia trachomatis detection directly in urine sample.

Authors:  Jekaterina Jevtuševskaja; Julia Uusna; Liis Andresen; Katrin Krõlov; Made Laanpere; Tiia Grellier; Indrek Tulp; Ülo Langel
Journal:  BMC Infect Dis       Date:  2016-07-13       Impact factor: 3.090

7.  New closed tube loop mediated isothermal amplification assay for prevention of product cross-contamination.

Authors:  K Karthik; Rajesh Rathore; Prasad Thomas; T R Arun; K N Viswas; Kuldeep Dhama; R K Agarwal
Journal:  MethodsX       Date:  2014-08-27

8.  Investigation of Pneumocystis jirovecii colonization in patients with chronic pulmonary diseases in the People's Republic of China.

Authors:  Dong-Dong Wang; Ming-Quan Zheng; Nan Zhang; Chun-Li An
Journal:  Int J Chron Obstruct Pulmon Dis       Date:  2015-09-29

9.  Development and evaluation of a Loop Mediated Isothermal Amplification (LAMP) technique for the detection of hookworm (Necator americanus) infection in fecal samples.

Authors:  Robert Muriuki Mugambi; Eric L Agola; Ibrahim N Mwangi; Johnson Kinyua; Esther Andia Shiraho; Gerald M Mkoji
Journal:  Parasit Vectors       Date:  2015-11-06       Impact factor: 3.876

Review 10.  Loop mediated isothermal amplification: An innovative gene amplification technique for animal diseases.

Authors:  Pravas Ranjan Sahoo; Kamadev Sethy; Swagat Mohapatra; Debasis Panda
Journal:  Vet World       Date:  2016-05-11
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