Literature DB >> 24767982

Next generation restoration genetics: applications and opportunities.

Anna V Williams1, Paul G Nevill1, Siegfried L Krauss2.   

Abstract

Restoration ecology is a young scientific discipline underpinning improvements in the rapid global expansion of ecological restoration. The application of molecular tools over the past 20 years has made an important contribution to understanding genetic factors influencing ecological restoration success. Here we illustrate how recent advances in next generation sequencing (NGS) methods are revolutionising the practical contribution of genetics to restoration. Novel applications include a dramatically enhanced capacity to measure adaptive variation for optimal seed sourcing, high-throughput assessment and monitoring of natural and restored biological communities aboveground and belowground, and gene expression analysis as a measure of genetic resilience of restored populations. Challenges remain in data generation, handling and analysis, and how best to apply NGS for practical outcomes in restoration. Crown
Copyright © 2014. Published by Elsevier Ltd. All rights reserved.

Keywords:  adaptation; genotyping by sequencing; metabarcoding; next generation sequencing; population genomics; restoration ecology

Mesh:

Year:  2014        PMID: 24767982     DOI: 10.1016/j.tplants.2014.03.011

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  15 in total

1.  Building coral reef resilience through assisted evolution.

Authors:  Madeleine J H van Oppen; James K Oliver; Hollie M Putnam; Ruth D Gates
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

2.  Development of polymorphic microsatellite markers for the Tertiary relict tree species Taiwania cryptomerioides (Cupressaceae) in East Asia.

Authors:  Mengyun Qin; Ningning Zhang; Shixin Zhu; Caipeng Yue; Jinyong Huang; Hao Dong; Yang Lu
Journal:  Mol Biol Rep       Date:  2021-03-23       Impact factor: 2.316

3.  Is the genomics 'cart' before the restoration ecology 'horse'? Insights from qualitative interviews and trends from the literature.

Authors:  Jakki J Mohr; Peter A Harrison; Jessica Stanhope; Martin F Breed
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-06-27       Impact factor: 6.671

Review 4.  The potential of genomics for restoring ecosystems and biodiversity.

Authors:  Martin F Breed; Peter A Harrison; Colette Blyth; Margaret Byrne; Virginie Gaget; Nicholas J C Gellie; Scott V C Groom; Riley Hodgson; Jacob G Mills; Thomas A A Prowse; Dorothy A Steane; Jakki J Mohr
Journal:  Nat Rev Genet       Date:  2019-07-12       Impact factor: 53.242

5.  Recent insertion/deletion (reINDEL) mutations: increasing awareness to boost molecular-based research in ecology and evolution.

Authors:  Birgit C Schlick-Steiner; Wolfgang Arthofer; Karl Moder; Florian M Steiner
Journal:  Ecol Evol       Date:  2014-12-04       Impact factor: 2.912

6.  Genetic delineation of local provenance defines seed collection zones along a climate gradient.

Authors:  Kristina M Hufford; Erik J Veneklaas; Hans Lambers; Siegfried L Krauss
Journal:  AoB Plants       Date:  2016-01-10       Impact factor: 3.276

7.  The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene.

Authors:  Anna V Williams; Laura M Boykin; Katharine A Howell; Paul G Nevill; Ian Small
Journal:  PLoS One       Date:  2015-05-08       Impact factor: 3.240

8.  Characterization of Uncultured Genome Fragment from Soil Metagenomic Library Exposed Rare Mismatch of Internal Tetranucleotide Frequency.

Authors:  Yunpeng Liu; Dongqing Yang; Nan Zhang; Lin Chen; Zhongli Cui; Qirong Shen; Ruifu Zhang
Journal:  Front Microbiol       Date:  2016-12-22       Impact factor: 5.640

9.  Microsatellite primers for the rare shrub Acacia adinophylla (Fabaceae).

Authors:  Paul G Nevill; Grant Wardell-Johnson
Journal:  Appl Plant Sci       Date:  2016-11-03       Impact factor: 1.936

Review 10.  State of the science and challenges of breeding landscape plants with ecological function.

Authors:  H Dayton Wilde; Kamal J K Gandhi; Gregory Colson
Journal:  Hortic Res       Date:  2015-01-28       Impact factor: 6.793

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