Literature DB >> 24765045

2-Cyclo-heptyl-idene-N-phenyl-hydrazine-carbo-thio-amide.

Mehmet Akkurt1, Shaaban K Mohamed2, Joel T Mague3, Alaa A Hassan4, Mustafa R Albayati5.   

Abstract

In the title compound, C14H19N3S, the seven-membered cyclo-heptane ring adopts a chair conformation. An intra-molecular N-H⋯N hydrogen bond [graph-set motif S(5)] is present in the N-N-C-N chain between the ring systems. An intra-molecular C-H⋯S contact also occurs. In the crystal, pairs of mol-ecules form centrosymmetric dimers through N-H⋯S hydrogen bonds [graph-set R 2 (2)(8)]. These dimers are connected by C-H⋯S inter-actions with an R 2 (2)(14) motif.

Entities:  

Year:  2014        PMID: 24765045      PMCID: PMC3998488          DOI: 10.1107/S1600536814003948

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination chemistry of thio­semicarbazones, see: Gingras et al. (1961 ▶); Ali & Livingstone (1974 ▶); Lobana et al. (2009 ▶). For general biological properties of thio­semicarbazone scaffold compounds, see: Hu et al. (2006 ▶); Du et al. (2002 ▶); Lovejoy & Richardson (2002 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C14H19N3S M = 261.39 Monoclinic, a = 22.1371 (4) Å b = 6.1079 (1) Å c = 22.0796 (5) Å β = 113.219 (2)° V = 2743.61 (10) Å3 Z = 8 Cu Kα radiation μ = 1.97 mm−1 T = 100 K 0.20 × 0.08 × 0.04 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.83, T max = 0.93 11263 measured reflections 2693 independent reflections 2460 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.077 S = 1.07 2693 reflections 171 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814003948/bt6964sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814003948/bt6964Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814003948/bt6964Isup3.cml CCDC reference: 988001 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H19N3SF(000) = 1120
Mr = 261.39Dx = 1.266 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -C 2ycCell parameters from 8726 reflections
a = 22.1371 (4) Åθ = 4.4–72.4°
b = 6.1079 (1) ŵ = 1.97 mm1
c = 22.0796 (5) ÅT = 100 K
β = 113.219 (2)°Parallelepiped, colourless
V = 2743.61 (10) Å30.20 × 0.08 × 0.04 mm
Z = 8
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer2693 independent reflections
Radiation source: INCOATEC IµS micro–focus source2460 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.023
Detector resolution: 10.4167 pixels mm-1θmax = 72.4°, θmin = 4.4°
ω scansh = −25→27
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −7→7
Tmin = 0.83, Tmax = 0.93l = −27→27
11263 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.077w = 1/[σ2(Fo2) + (0.0368P)2 + 2.2793P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2693 reflectionsΔρmax = 0.24 e Å3
171 parametersΔρmin = −0.24 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.17859 (2)0.78279 (5)0.04498 (2)0.0211 (1)
N10.11142 (5)0.39799 (19)0.02178 (5)0.0198 (3)
N20.17477 (5)0.46222 (18)−0.03562 (5)0.0198 (3)
N30.15155 (5)0.26265 (17)−0.06567 (5)0.0194 (3)
C10.07507 (6)0.4095 (2)0.06186 (6)0.0184 (3)
C20.07037 (6)0.5909 (2)0.09770 (6)0.0238 (4)
C30.03058 (6)0.5801 (2)0.13315 (7)0.0255 (4)
C4−0.00440 (6)0.3922 (2)0.13341 (6)0.0246 (4)
C50.00110 (7)0.2115 (2)0.09818 (7)0.0260 (4)
C60.04086 (6)0.2191 (2)0.06301 (6)0.0226 (4)
C70.15252 (6)0.5377 (2)0.01003 (6)0.0187 (3)
C80.17441 (6)0.1871 (2)−0.10668 (6)0.0186 (3)
C90.22606 (6)0.3024 (2)−0.12320 (6)0.0201 (3)
C100.24745 (6)0.1938 (2)−0.17382 (6)0.0221 (4)
C110.19353 (7)0.1805 (2)−0.24352 (6)0.0254 (4)
C120.14582 (7)−0.0109 (2)−0.25458 (6)0.0261 (4)
C130.10499 (6)−0.0088 (2)−0.21264 (6)0.0259 (4)
C140.14621 (6)−0.0277 (2)−0.13788 (6)0.0217 (4)
H1N0.1062 (8)0.280 (3)−0.0007 (8)0.023 (4)*
H20.094100.720900.098000.0290*
H2N0.2057 (8)0.535 (3)−0.0405 (8)0.025 (4)*
H30.027300.704100.157700.0310*
H4−0.031800.387600.157400.0300*
H5−0.022500.081500.098100.0310*
H60.044800.093500.039500.0270*
H9A0.265500.32090−0.081900.0240*
H9B0.209500.45070−0.139500.0240*
H10A0.262900.04360−0.158600.0270*
H10B0.285100.27640−0.175700.0270*
H11A0.168100.31870−0.253000.0300*
H11B0.214600.16830−0.275400.0300*
H12A0.11540−0.01210−0.301600.0310*
H12B0.17130−0.14880−0.245700.0310*
H13A0.07340−0.13190−0.226500.0310*
H13B0.079300.12880−0.221300.0310*
H14A0.11820−0.08710−0.116200.0260*
H14B0.18260−0.13250−0.130400.0260*
U11U22U33U12U13U23
S10.0234 (2)0.0197 (2)0.0226 (2)−0.0056 (1)0.0116 (1)−0.0035 (1)
N10.0235 (5)0.0191 (6)0.0189 (5)−0.0053 (4)0.0106 (4)−0.0042 (4)
N20.0225 (5)0.0195 (6)0.0209 (5)−0.0054 (4)0.0122 (4)−0.0025 (4)
N30.0215 (5)0.0183 (5)0.0188 (5)−0.0021 (4)0.0084 (4)−0.0008 (4)
C10.0151 (5)0.0240 (7)0.0148 (5)−0.0009 (5)0.0046 (4)0.0016 (5)
C20.0252 (6)0.0235 (7)0.0249 (6)−0.0062 (5)0.0123 (5)−0.0032 (5)
C30.0280 (7)0.0277 (7)0.0242 (6)−0.0015 (6)0.0138 (6)−0.0035 (5)
C40.0209 (6)0.0323 (8)0.0238 (6)0.0001 (5)0.0122 (5)0.0031 (6)
C50.0229 (6)0.0249 (7)0.0326 (7)−0.0038 (5)0.0136 (6)0.0026 (6)
C60.0216 (6)0.0222 (7)0.0247 (6)−0.0023 (5)0.0099 (5)−0.0013 (5)
C70.0173 (6)0.0213 (6)0.0162 (5)−0.0001 (5)0.0051 (5)0.0018 (5)
C80.0180 (6)0.0203 (6)0.0179 (6)0.0000 (5)0.0074 (5)0.0024 (5)
C90.0214 (6)0.0199 (6)0.0202 (6)−0.0035 (5)0.0095 (5)0.0004 (5)
C100.0219 (6)0.0251 (7)0.0234 (6)−0.0027 (5)0.0133 (5)0.0002 (5)
C110.0295 (7)0.0293 (7)0.0208 (6)−0.0028 (6)0.0136 (5)0.0005 (5)
C120.0267 (6)0.0314 (8)0.0215 (6)−0.0038 (6)0.0109 (5)−0.0052 (6)
C130.0218 (6)0.0310 (7)0.0257 (7)−0.0057 (5)0.0103 (5)−0.0080 (6)
C140.0230 (6)0.0217 (7)0.0251 (6)−0.0045 (5)0.0146 (5)−0.0025 (5)
S1—C71.6788 (13)C12—C131.528 (2)
N1—C11.4132 (18)C13—C141.5437 (17)
N1—C71.3451 (18)C2—H20.9500
N2—N31.3861 (15)C3—H30.9500
N2—C71.3648 (17)C4—H40.9500
N3—C81.2846 (17)C5—H50.9500
N1—H1N0.857 (18)C6—H60.9500
N2—H2N0.858 (19)C9—H9A0.9900
C1—C61.3935 (18)C9—H9B0.9900
C1—C21.3891 (18)C10—H10A0.9900
C2—C31.392 (2)C10—H10B0.9900
C3—C41.3858 (18)C11—H11A0.9900
C4—C51.3830 (18)C11—H11B0.9900
C5—C61.385 (2)C12—H12A0.9900
C8—C141.4988 (17)C12—H12B0.9900
C8—C91.5051 (19)C13—H13A0.9900
C9—C101.5267 (18)C13—H13B0.9900
C10—C111.5334 (18)C14—H14A0.9900
C11—C121.529 (2)C14—H14B0.9900
C1—N1—C7133.21 (11)C6—C5—H5120.00
N3—N2—C7118.48 (11)C1—C6—H6120.00
N2—N3—C8118.59 (11)C5—C6—H6120.00
C7—N1—H1N111.7 (12)C8—C9—H9A108.00
C1—N1—H1N115.1 (12)C8—C9—H9B108.00
C7—N2—H2N117.1 (12)C10—C9—H9A108.00
N3—N2—H2N124.0 (12)C10—C9—H9B108.00
N1—C1—C2125.84 (12)H9A—C9—H9B107.00
C2—C1—C6119.47 (12)C9—C10—H10A109.00
N1—C1—C6114.68 (11)C9—C10—H10B109.00
C1—C2—C3119.26 (12)C11—C10—H10A109.00
C2—C3—C4121.35 (12)C11—C10—H10B109.00
C3—C4—C5119.04 (13)H10A—C10—H10B108.00
C4—C5—C6120.32 (12)C10—C11—H11A109.00
C1—C6—C5120.54 (12)C10—C11—H11B109.00
S1—C7—N2118.81 (10)C12—C11—H11A109.00
N1—C7—N2113.37 (11)C12—C11—H11B109.00
S1—C7—N1127.82 (10)H11A—C11—H11B108.00
N3—C8—C9123.42 (11)C11—C12—H12A108.00
N3—C8—C14115.47 (12)C11—C12—H12B108.00
C9—C8—C14121.12 (11)C13—C12—H12A108.00
C8—C9—C10117.30 (10)C13—C12—H12B108.00
C9—C10—C11114.48 (12)H12A—C12—H12B107.00
C10—C11—C12114.59 (10)C12—C13—H13A109.00
C11—C12—C13115.67 (11)C12—C13—H13B109.00
C12—C13—C14113.95 (11)C14—C13—H13A109.00
C8—C14—C13112.92 (10)C14—C13—H13B109.00
C1—C2—H2120.00H13A—C13—H13B108.00
C3—C2—H2120.00C8—C14—H14A109.00
C2—C3—H3119.00C8—C14—H14B109.00
C4—C3—H3119.00C13—C14—H14A109.00
C3—C4—H4120.00C13—C14—H14B109.00
C5—C4—H4120.00H14A—C14—H14B108.00
C4—C5—H5120.00
C7—N1—C1—C25.0 (2)C1—C2—C3—C40.0 (2)
C7—N1—C1—C6−176.19 (13)C2—C3—C4—C50.7 (2)
C1—N1—C7—S13.8 (2)C3—C4—C5—C6−0.2 (2)
C1—N1—C7—N2−176.94 (12)C4—C5—C6—C1−0.9 (2)
C7—N2—N3—C8−177.23 (12)N3—C8—C9—C10−178.99 (12)
N3—N2—C7—S1−178.15 (9)C14—C8—C9—C101.11 (17)
N3—N2—C7—N12.53 (16)N3—C8—C14—C13113.26 (13)
N2—N3—C8—C14−179.13 (10)C9—C8—C14—C13−66.84 (16)
N2—N3—C8—C90.97 (18)C8—C9—C10—C1165.39 (14)
N1—C1—C2—C3177.64 (12)C9—C10—C11—C12−81.85 (14)
C2—C1—C6—C51.6 (2)C10—C11—C12—C1362.65 (16)
C6—C1—C2—C3−1.15 (19)C11—C12—C13—C14−63.37 (14)
N1—C1—C6—C5−177.31 (12)C12—C13—C14—C882.43 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N30.857 (18)2.052 (18)2.5599 (16)117.2 (16)
N2—H2N···S1i0.858 (19)2.830 (19)3.6790 (13)170.5 (15)
C2—H2···S10.952.603.2660 (15)128
C9—H9A···S1i0.992.693.3141 (13)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯N30.857 (18)2.052 (18)2.5599 (16)117.2 (16)
N2—H2N⋯S1i 0.858 (19)2.830 (19)3.6790 (13)170.5 (15)
C2—H2⋯S10.952.603.2660 (15)128
C9—H9A⋯S1i 0.992.693.3141 (13)121

Symmetry code: (i) .

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1.  1-{[(Z)-Cyclo-pentyl-idene]amino}-3-phenyl-thio-urea.

Authors:  Joel T Mague; Shaaban K Mohamed; Mehmet Akkurt; Alaa A Hassan; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-05

2.  1-[(Cyclo-hexyl-idene)amino]-3-(prop-2-en-1-yl)thio-urea.

Authors:  Shaaban K Mohamed; Joel T Mague; Mehmet Akkurt; Alaa A Hassan; Mustafa R Albayati
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