| Literature DB >> 24765033 |
Ibukun O Shotonwa1, René T Boeré1.
Abstract
The title salt, C6Entities:
Year: 2014 PMID: 24765033 PMCID: PMC3998408 DOI: 10.1107/S1600536814003511
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7N2S+·I− | |
| Monoclinic, | Mo |
| Cell parameters from 9990 reflections | |
| θ = 2.5–27.4° | |
| µ = 3.89 mm−1 | |
| β = 101.165 (1)° | |
| Block, orange | |
| 0.31 × 0.23 × 0.18 mm |
| Bruker APEXII CCD area-detector diffractometer | 3923 independent reflections |
| Radiation source: fine-focus sealed tube, Bruker D8 | 3684 reflections with |
| Graphite monochromator | |
| Detector resolution: 66.06 pixels mm-1 | θmax = 27.4°, θmin = 1.7° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 19180 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3923 reflections | (Δ/σ)max = 0.003 |
| 199 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.36 e Å−3 |
| Experimental. A crystal coated in Paratone (TM) oil was mounted on the end of a thin glass capillary and cooled in the gas stream of the diffractometer Kryoflex device. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Amine and pyridinium NH atoms freely refined in order to get H-bond s.u. data. The isotropic displacements were set to 1.2* values of attached N. |
| I1 | 0.73295 (2) | 0.78676 (2) | 0.40917 (2) | 0.02306 (4) | |
| I2 | 0.50416 (2) | −0.34932 (2) | 0.65408 (2) | 0.02433 (4) | |
| S1 | 0.23724 (3) | 0.15493 (7) | 0.82498 (2) | 0.03064 (11) | |
| N1 | 0.32690 (10) | 0.4190 (2) | 0.83135 (8) | 0.0322 (4) | |
| H1A | 0.3653 (13) | 0.467 (3) | 0.8274 (10) | 0.039* | |
| H1B | 0.3022 (13) | 0.473 (3) | 0.8524 (10) | 0.039* | |
| N2 | 0.42894 (8) | 0.0542 (2) | 0.69703 (6) | 0.0237 (3) | |
| H2 | 0.4497 (11) | 0.014 (3) | 0.6721 (9) | 0.028* | |
| C1 | 0.30728 (10) | 0.2657 (2) | 0.81067 (7) | 0.0221 (4) | |
| C2 | 0.35203 (9) | 0.1918 (2) | 0.77127 (7) | 0.0201 (3) | |
| C3 | 0.38691 (10) | 0.2986 (2) | 0.73855 (8) | 0.0226 (4) | |
| H3 | 0.3849 | 0.4204 | 0.7424 | 0.027* | |
| C4 | 0.42429 (10) | 0.2264 (2) | 0.70060 (8) | 0.0238 (4) | |
| H4 | 0.4467 | 0.2983 | 0.6771 | 0.029* | |
| C5 | 0.39722 (10) | −0.0526 (2) | 0.72831 (8) | 0.0258 (4) | |
| H5 | 0.4018 | −0.1740 | 0.7247 | 0.031* | |
| C6 | 0.35787 (10) | 0.0139 (2) | 0.76581 (8) | 0.0253 (4) | |
| H6 | 0.3348 | −0.0613 | 0.7879 | 0.030* | |
| S2 | 0.48535 (3) | 0.15223 (6) | 0.57798 (2) | 0.02810 (10) | |
| N3 | 0.59993 (10) | −0.0467 (2) | 0.58319 (8) | 0.0304 (4) | |
| H3A | 0.6393 (13) | −0.078 (3) | 0.5779 (10) | 0.036* | |
| H3B | 0.5804 (13) | −0.120 (3) | 0.6025 (10) | 0.036* | |
| N4 | 0.66095 (9) | 0.4143 (2) | 0.45727 (7) | 0.0294 (4) | |
| H4A | 0.6785 (12) | 0.483 (3) | 0.4351 (9) | 0.035* | |
| C7 | 0.56575 (10) | 0.0956 (2) | 0.56424 (7) | 0.0209 (4) | |
| C8 | 0.60102 (9) | 0.2080 (2) | 0.52709 (7) | 0.0203 (4) | |
| C9 | 0.64262 (10) | 0.1370 (2) | 0.49061 (8) | 0.0244 (4) | |
| H9 | 0.6511 | 0.0161 | 0.4904 | 0.029* | |
| C10 | 0.67111 (11) | 0.2439 (3) | 0.45512 (8) | 0.0287 (4) | |
| H10 | 0.6979 | 0.1969 | 0.4291 | 0.034* | |
| C11 | 0.62265 (11) | 0.4872 (3) | 0.49209 (8) | 0.0299 (4) | |
| H11 | 0.6173 | 0.6091 | 0.4926 | 0.036* | |
| C12 | 0.59099 (10) | 0.3860 (2) | 0.52727 (8) | 0.0259 (4) | |
| H12 | 0.5626 | 0.4369 | 0.5514 | 0.031* |
| I1 | 0.02298 (6) | 0.02070 (6) | 0.02617 (6) | −0.00052 (4) | 0.00639 (5) | 0.00397 (4) |
| I2 | 0.02670 (7) | 0.01916 (6) | 0.02859 (7) | 0.00127 (5) | 0.00896 (5) | 0.00029 (5) |
| S1 | 0.0295 (3) | 0.0312 (3) | 0.0355 (3) | −0.0050 (2) | 0.0170 (2) | −0.0023 (2) |
| N1 | 0.0314 (9) | 0.0302 (10) | 0.0400 (10) | −0.0058 (8) | 0.0195 (8) | −0.0138 (8) |
| N2 | 0.0205 (8) | 0.0296 (9) | 0.0216 (8) | 0.0028 (6) | 0.0058 (6) | −0.0056 (6) |
| C1 | 0.0227 (9) | 0.0233 (9) | 0.0211 (8) | 0.0025 (7) | 0.0060 (7) | 0.0004 (7) |
| C2 | 0.0185 (8) | 0.0228 (9) | 0.0186 (8) | 0.0012 (7) | 0.0029 (7) | −0.0017 (7) |
| C3 | 0.0246 (9) | 0.0197 (9) | 0.0235 (9) | −0.0001 (7) | 0.0048 (7) | −0.0003 (7) |
| C4 | 0.0246 (9) | 0.0248 (9) | 0.0226 (9) | −0.0017 (7) | 0.0056 (7) | 0.0002 (7) |
| C5 | 0.0270 (10) | 0.0198 (9) | 0.0304 (10) | 0.0022 (7) | 0.0052 (8) | −0.0026 (7) |
| C6 | 0.0280 (10) | 0.0206 (9) | 0.0287 (9) | −0.0006 (8) | 0.0086 (8) | 0.0014 (7) |
| S2 | 0.0268 (2) | 0.0295 (3) | 0.0317 (2) | 0.00596 (19) | 0.0148 (2) | 0.0049 (2) |
| N3 | 0.0259 (9) | 0.0295 (9) | 0.0392 (10) | 0.0061 (7) | 0.0150 (8) | 0.0130 (8) |
| N4 | 0.0259 (8) | 0.0325 (9) | 0.0284 (8) | −0.0097 (7) | 0.0017 (7) | 0.0105 (7) |
| C7 | 0.0219 (9) | 0.0219 (9) | 0.0194 (8) | −0.0004 (7) | 0.0053 (7) | −0.0006 (7) |
| C8 | 0.0185 (8) | 0.0213 (9) | 0.0204 (8) | −0.0016 (7) | 0.0018 (7) | 0.0005 (7) |
| C9 | 0.0229 (9) | 0.0250 (10) | 0.0263 (9) | −0.0019 (7) | 0.0073 (7) | −0.0004 (7) |
| C10 | 0.0260 (10) | 0.0353 (11) | 0.0261 (9) | −0.0044 (8) | 0.0082 (8) | 0.0019 (8) |
| C11 | 0.0295 (10) | 0.0212 (9) | 0.0358 (11) | −0.0043 (8) | −0.0020 (8) | 0.0061 (8) |
| C12 | 0.0278 (10) | 0.0225 (9) | 0.0267 (9) | −0.0002 (8) | 0.0036 (8) | −0.0004 (7) |
| S1—C1 | 1.6608 (19) | S2—C7 | 1.6648 (18) |
| N1—C1 | 1.313 (3) | N3—C7 | 1.312 (2) |
| N1—H1A | 0.83 (2) | N3—H3A | 0.81 (2) |
| N1—H1B | 0.86 (2) | N3—H3B | 0.86 (2) |
| N2—C5 | 1.336 (2) | N4—C11 | 1.334 (3) |
| N2—C4 | 1.341 (2) | N4—C10 | 1.336 (3) |
| N2—H2 | 0.84 (2) | N4—H4A | 0.86 (2) |
| C1—C2 | 1.500 (2) | C7—C8 | 1.494 (2) |
| C2—C6 | 1.391 (2) | C8—C12 | 1.392 (3) |
| C2—C3 | 1.392 (2) | C8—C9 | 1.399 (2) |
| C3—C4 | 1.377 (3) | C9—C10 | 1.373 (3) |
| C3—H3 | 0.9500 | C9—H9 | 0.9500 |
| C4—H4 | 0.9500 | C10—H10 | 0.9500 |
| C5—C6 | 1.376 (3) | C11—C12 | 1.374 (3) |
| C5—H5 | 0.9500 | C11—H11 | 0.9500 |
| C6—H6 | 0.9500 | C12—H12 | 0.9500 |
| C1—N1—H1A | 123.0 (17) | C7—N3—H3A | 126.7 (17) |
| C1—N1—H1B | 121.3 (16) | C7—N3—H3B | 120.9 (16) |
| H1A—N1—H1B | 115 (2) | H3A—N3—H3B | 112 (2) |
| C5—N2—C4 | 122.57 (16) | C11—N4—C10 | 122.80 (17) |
| C5—N2—H2 | 120.0 (15) | C11—N4—H4A | 116.7 (15) |
| C4—N2—H2 | 117.2 (15) | C10—N4—H4A | 120.5 (15) |
| N1—C1—C2 | 115.93 (16) | N3—C7—C8 | 117.14 (16) |
| N1—C1—S1 | 124.24 (14) | N3—C7—S2 | 123.51 (15) |
| C2—C1—S1 | 119.83 (14) | C8—C7—S2 | 119.32 (13) |
| C6—C2—C3 | 118.73 (16) | C12—C8—C9 | 118.95 (17) |
| C6—C2—C1 | 120.18 (16) | C12—C8—C7 | 119.98 (16) |
| C3—C2—C1 | 121.07 (16) | C9—C8—C7 | 121.04 (16) |
| C4—C3—C2 | 119.58 (17) | C10—C9—C8 | 119.26 (18) |
| C4—C3—H3 | 120.2 | C10—C9—H9 | 120.4 |
| C2—C3—H3 | 120.2 | C8—C9—H9 | 120.4 |
| N2—C4—C3 | 119.64 (17) | N4—C10—C9 | 119.73 (18) |
| N2—C4—H4 | 120.2 | N4—C10—H10 | 120.1 |
| C3—C4—H4 | 120.2 | C9—C10—H10 | 120.1 |
| N2—C5—C6 | 119.70 (17) | N4—C11—C12 | 119.95 (18) |
| N2—C5—H5 | 120.1 | N4—C11—H11 | 120.0 |
| C6—C5—H5 | 120.1 | C12—C11—H11 | 120.0 |
| C5—C6—C2 | 119.74 (17) | C11—C12—C8 | 119.26 (18) |
| C5—C6—H6 | 120.1 | C11—C12—H12 | 120.4 |
| C2—C6—H6 | 120.1 | C8—C12—H12 | 120.4 |
| N1—C1—C2—C6 | 152.73 (19) | N3—C7—C8—C12 | −148.94 (18) |
| S1—C1—C2—C6 | −28.0 (2) | S2—C7—C8—C12 | 32.8 (2) |
| N1—C1—C2—C3 | −28.9 (3) | N3—C7—C8—C9 | 32.9 (3) |
| S1—C1—C2—C3 | 150.45 (15) | S2—C7—C8—C9 | −145.37 (15) |
| C6—C2—C3—C4 | 1.9 (3) | C12—C8—C9—C10 | −1.4 (3) |
| C1—C2—C3—C4 | −176.50 (17) | C7—C8—C9—C10 | 176.76 (17) |
| C5—N2—C4—C3 | 1.4 (3) | C11—N4—C10—C9 | −1.3 (3) |
| C2—C3—C4—N2 | −2.4 (3) | C8—C9—C10—N4 | 2.3 (3) |
| C4—N2—C5—C6 | 0.2 (3) | C10—N4—C11—C12 | −0.8 (3) |
| N2—C5—C6—C2 | −0.6 (3) | N4—C11—C12—C8 | 1.7 (3) |
| C3—C2—C6—C5 | −0.4 (3) | C9—C8—C12—C11 | −0.6 (3) |
| C1—C2—C6—C5 | 178.03 (17) | C7—C8—C12—C11 | −178.77 (17) |
| H··· | ||||
| N1—H1 | 0.83 (2) | 2.79 (2) | 3.5996 (18) | 164 (2) |
| N1—H1 | 0.86 (2) | 2.78 (3) | 3.6232 (17) | 167 (2) |
| N2—H2···I2 | 0.84 (2) | 3.06 (2) | 3.6622 (16) | 131.0 (18) |
| N2—H2···S2 | 0.84 (2) | 2.71 (2) | 3.3410 (16) | 133.2 (18) |
| N3—H3 | 0.81 (2) | 2.86 (2) | 3.6188 (17) | 157 (2) |
| N3—H3 | 0.86 (2) | 2.73 (3) | 3.5854 (18) | 173 (2) |
| N4—H4 | 0.86 (2) | 2.69 (2) | 3.4804 (17) | 152.9 (19) |
| C4—H4···I2iv | 0.95 | 3.03 | 3.8684 (19) | 149 |
| C4—H4···S2 | 0.95 | 2.87 | 3.4275 (19) | 119 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.83 (2) | 2.79 (2) | 3.5996 (18) | 164 (2) |
| N1—H1 | 0.86 (2) | 2.78 (3) | 3.6232 (17) | 167 (2) |
| N2—H2⋯I2 | 0.84 (2) | 3.06 (2) | 3.6622 (16) | 131.0 (18) |
| N2—H2⋯S2 | 0.84 (2) | 2.71 (2) | 3.3410 (16) | 133.2 (18) |
| N3—H3 | 0.81 (2) | 2.86 (2) | 3.6188 (17) | 157 (2) |
| N3—H3 | 0.86 (2) | 2.73 (3) | 3.5854 (18) | 173 (2) |
| N4—H4 | 0.86 (2) | 2.69 (2) | 3.4804 (17) | 152.9 (19) |
| C4—H4⋯I2iv | 0.95 | 3.03 | 3.8684 (19) | 149 |
| C4—H4⋯S2 | 0.95 | 2.87 | 3.4275 (19) | 119 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .