Literature DB >> 24765033

4-Thio-carbamoylpyridin-1-ium iodide.

Ibukun O Shotonwa1, René T Boeré1.   

Abstract

The title salt, C6n class="Species">H7N2S(+)·I(-), crystallizes with two independent cations and two anions in the asymmetric unit. In one of the cations, the dihedral angle between the pyridinium ring and the thioamide group is 28.9 (2)°; in the other it is 33.5 (2)°. In the crystal, N-H⋯S and C-H⋯S hydrogen bonds link the independent cations into pairs. These pairs form a three-dimensional network through additional N-H⋯I and C-H⋯I hydrogen bonds to the anions.

Entities:  

Year:  2014        PMID: 24765033      PMCID: PMC3998408          DOI: 10.1107/S1600536814003511

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Liebscher & Hartmann (1977 ▶). For related structures, see: Alléaume et al. (1973 ▶); Cardoso et al. (2008 ▶); Colleter & Gadret (1967 ▶, 1968a ▶,b ▶); Colleter et al. (1970 ▶, 1973 ▶); n class="Chemical">Gadret & Goursolle (1969 ▶); Gel’mbol’dt, et al. (2010 ▶); Kavitha et al. (2008 ▶); Revathi et al. (2009 ▶). For drug action, see: Vannelli et al. (2002 ▶). For a DFT computational study of the parent thio­amide and for vibrational spectroscopy data, see: Wysokińsky et al. (2006 ▶).

Experimental

Crystal data

C6H7N2S+·I− M = 266.10 Monoclinic, a = 18.7580 (11) Å b = 7.7476 (4) Å c = 24.1784 (14) Å β = 101.165 (1)° V = 3447.3 (3) Å3 Z = 16 Mo Kα radiation μ = 3.89 mm−1 T = 173 K 0.31 × 0.23 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.541, T max = 0.746 19180 measured reflections 3923 independent reflections 3684 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.014 wR(F 2) = 0.034 S = 1.08 3923 reflections 199 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814003511/rn2122sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814003511/rn2122Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814003511/rn2122Isup3.cml CCDC reference: 987377 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H7N2S+·IF(000) = 2016
Mr = 266.10Dx = 2.051 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 18.7580 (11) ÅCell parameters from 9990 reflections
b = 7.7476 (4) Åθ = 2.5–27.4°
c = 24.1784 (14) ŵ = 3.89 mm1
β = 101.165 (1)°T = 173 K
V = 3447.3 (3) Å3Block, orange
Z = 160.31 × 0.23 × 0.18 mm
Bruker APEXII CCD area-detector diffractometer3923 independent reflections
Radiation source: fine-focus sealed tube, Bruker D83684 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 66.06 pixels mm-1θmax = 27.4°, θmin = 1.7°
φ and ω scansh = −24→24
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −10→10
Tmin = 0.541, Tmax = 0.746l = −31→31
19180 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.014Hydrogen site location: difference Fourier map
wR(F2) = 0.034H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.014P)2 + 2.9155P] where P = (Fo2 + 2Fc2)/3
3923 reflections(Δ/σ)max = 0.003
199 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.36 e Å3
Experimental. A crystal coated in Paratone (TM) oil was mounted on the end of a thin glass capillary and cooled in the gas stream of the diffractometer Kryoflex device.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Amine and pyridinium NH atoms freely refined in order to get H-bond s.u. data. The isotropic displacements were set to 1.2* values of attached N.
xyzUiso*/Ueq
I10.73295 (2)0.78676 (2)0.40917 (2)0.02306 (4)
I20.50416 (2)−0.34932 (2)0.65408 (2)0.02433 (4)
S10.23724 (3)0.15493 (7)0.82498 (2)0.03064 (11)
N10.32690 (10)0.4190 (2)0.83135 (8)0.0322 (4)
H1A0.3653 (13)0.467 (3)0.8274 (10)0.039*
H1B0.3022 (13)0.473 (3)0.8524 (10)0.039*
N20.42894 (8)0.0542 (2)0.69703 (6)0.0237 (3)
H20.4497 (11)0.014 (3)0.6721 (9)0.028*
C10.30728 (10)0.2657 (2)0.81067 (7)0.0221 (4)
C20.35203 (9)0.1918 (2)0.77127 (7)0.0201 (3)
C30.38691 (10)0.2986 (2)0.73855 (8)0.0226 (4)
H30.38490.42040.74240.027*
C40.42429 (10)0.2264 (2)0.70060 (8)0.0238 (4)
H40.44670.29830.67710.029*
C50.39722 (10)−0.0526 (2)0.72831 (8)0.0258 (4)
H50.4018−0.17400.72470.031*
C60.35787 (10)0.0139 (2)0.76581 (8)0.0253 (4)
H60.3348−0.06130.78790.030*
S20.48535 (3)0.15223 (6)0.57798 (2)0.02810 (10)
N30.59993 (10)−0.0467 (2)0.58319 (8)0.0304 (4)
H3A0.6393 (13)−0.078 (3)0.5779 (10)0.036*
H3B0.5804 (13)−0.120 (3)0.6025 (10)0.036*
N40.66095 (9)0.4143 (2)0.45727 (7)0.0294 (4)
H4A0.6785 (12)0.483 (3)0.4351 (9)0.035*
C70.56575 (10)0.0956 (2)0.56424 (7)0.0209 (4)
C80.60102 (9)0.2080 (2)0.52709 (7)0.0203 (4)
C90.64262 (10)0.1370 (2)0.49061 (8)0.0244 (4)
H90.65110.01610.49040.029*
C100.67111 (11)0.2439 (3)0.45512 (8)0.0287 (4)
H100.69790.19690.42910.034*
C110.62265 (11)0.4872 (3)0.49209 (8)0.0299 (4)
H110.61730.60910.49260.036*
C120.59099 (10)0.3860 (2)0.52727 (8)0.0259 (4)
H120.56260.43690.55140.031*
U11U22U33U12U13U23
I10.02298 (6)0.02070 (6)0.02617 (6)−0.00052 (4)0.00639 (5)0.00397 (4)
I20.02670 (7)0.01916 (6)0.02859 (7)0.00127 (5)0.00896 (5)0.00029 (5)
S10.0295 (3)0.0312 (3)0.0355 (3)−0.0050 (2)0.0170 (2)−0.0023 (2)
N10.0314 (9)0.0302 (10)0.0400 (10)−0.0058 (8)0.0195 (8)−0.0138 (8)
N20.0205 (8)0.0296 (9)0.0216 (8)0.0028 (6)0.0058 (6)−0.0056 (6)
C10.0227 (9)0.0233 (9)0.0211 (8)0.0025 (7)0.0060 (7)0.0004 (7)
C20.0185 (8)0.0228 (9)0.0186 (8)0.0012 (7)0.0029 (7)−0.0017 (7)
C30.0246 (9)0.0197 (9)0.0235 (9)−0.0001 (7)0.0048 (7)−0.0003 (7)
C40.0246 (9)0.0248 (9)0.0226 (9)−0.0017 (7)0.0056 (7)0.0002 (7)
C50.0270 (10)0.0198 (9)0.0304 (10)0.0022 (7)0.0052 (8)−0.0026 (7)
C60.0280 (10)0.0206 (9)0.0287 (9)−0.0006 (8)0.0086 (8)0.0014 (7)
S20.0268 (2)0.0295 (3)0.0317 (2)0.00596 (19)0.0148 (2)0.0049 (2)
N30.0259 (9)0.0295 (9)0.0392 (10)0.0061 (7)0.0150 (8)0.0130 (8)
N40.0259 (8)0.0325 (9)0.0284 (8)−0.0097 (7)0.0017 (7)0.0105 (7)
C70.0219 (9)0.0219 (9)0.0194 (8)−0.0004 (7)0.0053 (7)−0.0006 (7)
C80.0185 (8)0.0213 (9)0.0204 (8)−0.0016 (7)0.0018 (7)0.0005 (7)
C90.0229 (9)0.0250 (10)0.0263 (9)−0.0019 (7)0.0073 (7)−0.0004 (7)
C100.0260 (10)0.0353 (11)0.0261 (9)−0.0044 (8)0.0082 (8)0.0019 (8)
C110.0295 (10)0.0212 (9)0.0358 (11)−0.0043 (8)−0.0020 (8)0.0061 (8)
C120.0278 (10)0.0225 (9)0.0267 (9)−0.0002 (8)0.0036 (8)−0.0004 (7)
S1—C11.6608 (19)S2—C71.6648 (18)
N1—C11.313 (3)N3—C71.312 (2)
N1—H1A0.83 (2)N3—H3A0.81 (2)
N1—H1B0.86 (2)N3—H3B0.86 (2)
N2—C51.336 (2)N4—C111.334 (3)
N2—C41.341 (2)N4—C101.336 (3)
N2—H20.84 (2)N4—H4A0.86 (2)
C1—C21.500 (2)C7—C81.494 (2)
C2—C61.391 (2)C8—C121.392 (3)
C2—C31.392 (2)C8—C91.399 (2)
C3—C41.377 (3)C9—C101.373 (3)
C3—H30.9500C9—H90.9500
C4—H40.9500C10—H100.9500
C5—C61.376 (3)C11—C121.374 (3)
C5—H50.9500C11—H110.9500
C6—H60.9500C12—H120.9500
C1—N1—H1A123.0 (17)C7—N3—H3A126.7 (17)
C1—N1—H1B121.3 (16)C7—N3—H3B120.9 (16)
H1A—N1—H1B115 (2)H3A—N3—H3B112 (2)
C5—N2—C4122.57 (16)C11—N4—C10122.80 (17)
C5—N2—H2120.0 (15)C11—N4—H4A116.7 (15)
C4—N2—H2117.2 (15)C10—N4—H4A120.5 (15)
N1—C1—C2115.93 (16)N3—C7—C8117.14 (16)
N1—C1—S1124.24 (14)N3—C7—S2123.51 (15)
C2—C1—S1119.83 (14)C8—C7—S2119.32 (13)
C6—C2—C3118.73 (16)C12—C8—C9118.95 (17)
C6—C2—C1120.18 (16)C12—C8—C7119.98 (16)
C3—C2—C1121.07 (16)C9—C8—C7121.04 (16)
C4—C3—C2119.58 (17)C10—C9—C8119.26 (18)
C4—C3—H3120.2C10—C9—H9120.4
C2—C3—H3120.2C8—C9—H9120.4
N2—C4—C3119.64 (17)N4—C10—C9119.73 (18)
N2—C4—H4120.2N4—C10—H10120.1
C3—C4—H4120.2C9—C10—H10120.1
N2—C5—C6119.70 (17)N4—C11—C12119.95 (18)
N2—C5—H5120.1N4—C11—H11120.0
C6—C5—H5120.1C12—C11—H11120.0
C5—C6—C2119.74 (17)C11—C12—C8119.26 (18)
C5—C6—H6120.1C11—C12—H12120.4
C2—C6—H6120.1C8—C12—H12120.4
N1—C1—C2—C6152.73 (19)N3—C7—C8—C12−148.94 (18)
S1—C1—C2—C6−28.0 (2)S2—C7—C8—C1232.8 (2)
N1—C1—C2—C3−28.9 (3)N3—C7—C8—C932.9 (3)
S1—C1—C2—C3150.45 (15)S2—C7—C8—C9−145.37 (15)
C6—C2—C3—C41.9 (3)C12—C8—C9—C10−1.4 (3)
C1—C2—C3—C4−176.50 (17)C7—C8—C9—C10176.76 (17)
C5—N2—C4—C31.4 (3)C11—N4—C10—C9−1.3 (3)
C2—C3—C4—N2−2.4 (3)C8—C9—C10—N42.3 (3)
C4—N2—C5—C60.2 (3)C10—N4—C11—C12−0.8 (3)
N2—C5—C6—C2−0.6 (3)N4—C11—C12—C81.7 (3)
C3—C2—C6—C5−0.4 (3)C9—C8—C12—C11−0.6 (3)
C1—C2—C6—C5178.03 (17)C7—C8—C12—C11−178.77 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1A···I2i0.83 (2)2.79 (2)3.5996 (18)164 (2)
N1—H1B···I1ii0.86 (2)2.78 (3)3.6232 (17)167 (2)
N2—H2···I20.84 (2)3.06 (2)3.6622 (16)131.0 (18)
N2—H2···S20.84 (2)2.71 (2)3.3410 (16)133.2 (18)
N3—H3A···I1iii0.81 (2)2.86 (2)3.6188 (17)157 (2)
N3—H3B···I20.86 (2)2.73 (3)3.5854 (18)173 (2)
N4—H4A···I10.86 (2)2.69 (2)3.4804 (17)152.9 (19)
C4—H4···I2iv0.953.033.8684 (19)149
C4—H4···S20.952.873.4275 (19)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯I2i 0.83 (2)2.79 (2)3.5996 (18)164 (2)
N1—H1B⋯I1ii 0.86 (2)2.78 (3)3.6232 (17)167 (2)
N2—H2⋯I20.84 (2)3.06 (2)3.6622 (16)131.0 (18)
N2—H2⋯S20.84 (2)2.71 (2)3.3410 (16)133.2 (18)
N3—H3A⋯I1iii 0.81 (2)2.86 (2)3.6188 (17)157 (2)
N3—H3B⋯I20.86 (2)2.73 (3)3.5854 (18)173 (2)
N4—H4A⋯I10.86 (2)2.69 (2)3.4804 (17)152.9 (19)
C4—H4⋯I2iv 0.953.033.8684 (19)149
C4—H4⋯S20.952.873.4275 (19)119

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The antituberculosis drug ethionamide is activated by a flavoprotein monooxygenase.

Authors:  Tommaso A Vannelli; Alina Dykman; Paul R Ortiz de Montellano
Journal:  J Biol Chem       Date:  2002-01-31       Impact factor: 5.157

3.  [Crystalline structure of antitubercular compounds. 3. Crystalline structure of propyl-2-thiocarbamoyl-4-pyridine].

Authors:  J C Colleter; M Gadret; M Goursolle
Journal:  Acta Crystallogr B       Date:  1970-10-15       Impact factor: 2.266

4.  [Crystalline structure of antitubercular compounds. I. Crystalline structure of the hydrochloride of ethionamide].

Authors:  J C Colleter; M Gadret
Journal:  Acta Crystallogr B       Date:  1968-04-15       Impact factor: 2.266

5.  N-Butyl-pyridine-4-thio-carboxamide.

Authors:  T Kavitha; C Revathi; M Hemalatha; A Dayalan; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

6.  [Crystalline structure of antitubercular compounds. II. Crystalline structure of hydrobromide of ethionamide. Comparison with that of the hydrochloride of ethionamide].

Authors:  J C Colleter; M Gadret
Journal:  Acta Crystallogr B       Date:  1968-04-15       Impact factor: 2.266

7.  (N-n-Butyl-pyridine-4-carbothio-amide-κN)chloridobis(dimethyl-glyoximato-κN,N')cobalt(III) hemihydrate.

Authors:  C Revathi; A Dayalan; K Sethusankar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20
  7 in total
  3 in total

1.  Crystal structures of tetra-kis-(pyridine-4-thio-amide-κN)bis-(thio-cyanato-κN)cobalt(II) monohydrate and bis-(pyridine-4-thio-amide-κN)bis-(thio-cyanato-κN)zinc(II).

Authors:  Tristan Neumann; Inke Jess; Christian Näther
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-01-12

2.  Crystal structure of catena-poly[[[bis-(pyridine-4-carbo-thio-amide-κN (1))cadmium]-di-μ-thio-cyanato-κ(2) N:S;κ(2) S:N] methanol disolvate].

Authors:  Tristan Neumann; Inke Jess; Christian Näther
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-02-20

3.  Crystal structures of (aceto-nitrile-κN)tris-(pyridine-4-thio-amide-κN)bis-(thio-cyanate-κN)cobalt(II) aceto-nitrile disolvate and tetra-kis-(pyridine-4-thio-amide-κN)bis-(thio-cyanate-κN)nickel(II) methanol penta-solvate.

Authors:  Tristan Neumann; Inke Jess; Christian Näther
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-06-12
  3 in total

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