Literature DB >> 24765030

Methyl 3'-benzyl-4'-(2,4-di-chloro-phen-yl)-1'-methyl-2-oxo-spiro-[indoline-3,2'-pyrrolidine]-3'-carboxyl-ate.

S Karthikeyan1, P Narayanan1, K Sethusankar1, Anthonisamy Devaraj2, Manickam Bakthadoss2.   

Abstract

In the title compound, C27H24Cl2N2O3, the indole ring system is essentially planar, with a maximum deviation of 0.082 (2) Å for the carbonyl C atom. It makes a dihedral angle of 88.53 (6)° with the mean plane of the 4-methyl-pyrrolidine ring, which adopts an envelope conformation with the N atom at the flap position. The mol-ecular structure is stabilized by intra-molecular C-H⋯O hydrogen bonds, which generate S(6) and S(7) ring motifs, and an intra-molecular π-π inter-action involving the benzyl and di-chloro-substituted benzene rings [centroid-centroid distance = 3.6291 (11) Å]. In the crystal, mol-ecules are linked via N-H⋯O hydrogen bonds, forming C(7) chains running parallel to [10-1].

Entities:  

Year:  2014        PMID: 24765030      PMCID: PMC3998484          DOI: 10.1107/S1600536814003523

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of spiro-oxindole derivatives, see: Hilton et al. (2000 ▶). For a related crystal structure, see: Karthikeyan et al. (2014 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For graph-set motifs, see: Bernstein et al. (1995 ▶). For bond-length distortions in small rings, see: Allen (1981 ▶).

Experimental

Crystal data

C27H24Cl2N2O3 M = 495.38 Monoclinic, a = 12.7051 (5) Å b = 14.1724 (6) Å c = 14.0322 (6) Å β = 109.424 (2)° V = 2382.85 (17) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 293 K 0.30 × 0.28 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer 27865 measured reflections 6466 independent reflections 4356 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.124 S = 1.00 6466 reflections 309 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.49 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814003523/su2699sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814003523/su2699Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814003523/su2699Isup3.cml CCDC reference: 888482 Additional supporting information: crystallographic information; 3D view; checkCIF report
C27H24Cl2N2O3F(000) = 1032
Mr = 495.38Dx = 1.381 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -p 2ynCell parameters from 6466 reflections
a = 12.7051 (5) Åθ = 2.1–29.3°
b = 14.1724 (6) ŵ = 0.31 mm1
c = 14.0322 (6) ÅT = 293 K
β = 109.424 (2)°Block, colorless
V = 2382.85 (17) Å30.30 × 0.28 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer4356 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
Graphite monochromatorθmax = 29.3°, θmin = 2.1°
ω scansh = −16→17
27865 measured reflectionsk = −19→13
6466 independent reflectionsl = −18→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0537P)2 + 0.8129P] where P = (Fo2 + 2Fc2)/3
6466 reflections(Δ/σ)max < 0.001
309 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.58285 (14)0.31080 (12)0.42423 (13)0.0422 (4)
C20.66005 (15)0.33021 (13)0.37693 (14)0.0483 (4)
H20.73010.30190.39850.058*
C30.63062 (15)0.39240 (13)0.29724 (15)0.0484 (4)
C40.52940 (16)0.43704 (13)0.26718 (15)0.0507 (5)
H40.51180.48090.21490.061*
C50.45350 (15)0.41603 (13)0.31561 (14)0.0459 (4)
H50.38480.44650.29510.055*
C60.47685 (13)0.35069 (12)0.39402 (12)0.0393 (4)
C70.39119 (14)0.32433 (12)0.44254 (12)0.0389 (4)
H70.43200.29610.50820.047*
C80.32681 (16)0.40830 (13)0.46311 (15)0.0502 (4)
H8A0.36720.43740.52750.060*
H8B0.31370.45530.41020.060*
C90.18556 (13)0.30092 (11)0.38043 (11)0.0346 (3)
C100.12965 (15)0.34886 (13)0.27525 (12)0.0426 (4)
C110.00156 (14)0.24664 (13)0.29794 (14)0.0449 (4)
C12−0.09784 (16)0.19937 (16)0.28444 (19)0.0649 (6)
H12−0.15690.20360.22390.078*
C13−0.10630 (18)0.14611 (16)0.3634 (2)0.0670 (6)
H13−0.17220.11390.35620.080*
C14−0.01904 (18)0.13971 (14)0.45262 (18)0.0581 (5)
H14−0.02660.10330.50510.070*
C150.08044 (15)0.18687 (13)0.46545 (14)0.0446 (4)
H150.13910.18290.52630.054*
C160.09119 (13)0.23953 (12)0.38709 (12)0.0373 (4)
C170.29931 (12)0.25062 (11)0.38356 (11)0.0311 (3)
C180.29733 (13)0.22452 (11)0.27577 (11)0.0339 (3)
H18A0.23460.18240.24710.041*
H18B0.28120.28190.23580.041*
C190.39826 (12)0.17915 (11)0.25989 (11)0.0334 (3)
C200.42743 (15)0.21109 (13)0.17845 (13)0.0447 (4)
H200.38630.25950.13840.054*
C210.51556 (17)0.17291 (15)0.15552 (16)0.0561 (5)
H210.53340.19580.10070.067*
C220.57727 (16)0.10121 (14)0.21310 (15)0.0522 (5)
H220.63760.07590.19830.063*
C230.54893 (15)0.06731 (13)0.29259 (14)0.0464 (4)
H230.58970.01800.33130.056*
C240.46040 (14)0.10554 (12)0.31595 (12)0.0401 (4)
H240.44230.08140.37020.048*
C250.30887 (12)0.16134 (11)0.44713 (11)0.0331 (3)
C260.25651 (17)0.00191 (13)0.44542 (15)0.0532 (5)
H26A0.3325−0.01800.47650.080*
H26B0.2161−0.04550.39860.080*
H26C0.22260.01090.49650.080*
C270.13946 (19)0.43922 (15)0.46547 (17)0.0609 (5)
H27A0.16630.47510.52690.091*
H27B0.07060.40890.46160.091*
H27C0.12730.48060.40860.091*
N10.22212 (12)0.36773 (10)0.46454 (10)0.0426 (3)
N20.02779 (13)0.31006 (12)0.23303 (11)0.0521 (4)
H2A−0.01600.32290.17300.063*
O10.16988 (12)0.41046 (10)0.23798 (10)0.0562 (4)
O20.35713 (10)0.15537 (9)0.53672 (8)0.0471 (3)
O30.25399 (9)0.08941 (8)0.39242 (8)0.0379 (3)
Cl10.62311 (4)0.23046 (4)0.52348 (4)0.06078 (16)
Cl20.72403 (5)0.41173 (4)0.23263 (5)0.07259 (19)
U11U22U33U12U13U23
C10.0388 (9)0.0436 (9)0.0367 (9)−0.0069 (7)0.0025 (7)0.0008 (7)
C20.0367 (9)0.0496 (11)0.0534 (11)−0.0066 (7)0.0082 (8)−0.0034 (8)
C30.0468 (10)0.0445 (10)0.0570 (11)−0.0149 (8)0.0214 (9)−0.0047 (8)
C40.0542 (11)0.0432 (10)0.0550 (11)−0.0088 (8)0.0185 (9)0.0090 (8)
C50.0411 (9)0.0446 (10)0.0488 (10)−0.0032 (7)0.0106 (8)0.0072 (8)
C60.0371 (8)0.0400 (9)0.0355 (8)−0.0079 (7)0.0052 (7)0.0000 (7)
C70.0380 (8)0.0435 (9)0.0300 (8)−0.0073 (7)0.0044 (6)0.0007 (7)
C80.0594 (11)0.0451 (10)0.0478 (11)−0.0102 (8)0.0201 (9)−0.0114 (8)
C90.0356 (8)0.0392 (8)0.0281 (8)0.0044 (6)0.0094 (6)0.0030 (6)
C100.0469 (10)0.0471 (10)0.0342 (9)0.0186 (8)0.0141 (7)0.0067 (7)
C110.0382 (9)0.0475 (10)0.0444 (10)0.0092 (7)0.0076 (8)−0.0071 (8)
C120.0387 (10)0.0653 (14)0.0781 (16)0.0025 (9)0.0025 (10)−0.0212 (12)
C130.0462 (11)0.0567 (13)0.1007 (19)−0.0084 (9)0.0278 (12)−0.0159 (13)
C140.0586 (12)0.0504 (11)0.0786 (15)−0.0027 (9)0.0406 (12)−0.0035 (10)
C150.0450 (9)0.0482 (10)0.0463 (10)0.0033 (8)0.0229 (8)−0.0004 (8)
C160.0338 (8)0.0415 (9)0.0371 (9)0.0057 (6)0.0125 (7)−0.0040 (7)
C170.0290 (7)0.0365 (8)0.0245 (7)0.0008 (6)0.0043 (6)0.0029 (6)
C180.0326 (8)0.0417 (9)0.0248 (7)0.0037 (6)0.0060 (6)0.0039 (6)
C190.0315 (7)0.0379 (8)0.0286 (7)−0.0015 (6)0.0071 (6)−0.0019 (6)
C200.0495 (10)0.0466 (10)0.0420 (10)0.0084 (8)0.0205 (8)0.0100 (8)
C210.0635 (12)0.0614 (12)0.0562 (12)0.0072 (10)0.0369 (10)0.0125 (10)
C220.0440 (10)0.0588 (12)0.0603 (12)0.0069 (8)0.0263 (9)−0.0008 (9)
C230.0416 (9)0.0478 (10)0.0469 (10)0.0102 (8)0.0110 (8)0.0038 (8)
C240.0414 (9)0.0454 (10)0.0338 (8)0.0041 (7)0.0128 (7)0.0053 (7)
C250.0282 (7)0.0409 (8)0.0272 (7)0.0022 (6)0.0053 (6)0.0019 (6)
C260.0685 (13)0.0385 (10)0.0508 (11)−0.0036 (9)0.0175 (10)0.0076 (8)
C270.0754 (14)0.0522 (12)0.0647 (13)0.0093 (10)0.0362 (11)−0.0085 (10)
N10.0498 (8)0.0424 (8)0.0365 (8)0.0002 (6)0.0156 (6)−0.0062 (6)
N20.0453 (9)0.0654 (10)0.0348 (8)0.0157 (7)−0.0012 (6)0.0029 (7)
O10.0649 (9)0.0567 (8)0.0516 (8)0.0211 (7)0.0253 (7)0.0221 (6)
O20.0499 (7)0.0546 (7)0.0272 (6)−0.0063 (6)0.0000 (5)0.0084 (5)
O30.0422 (6)0.0362 (6)0.0320 (6)−0.0011 (5)0.0079 (5)0.0016 (4)
Cl10.0510 (3)0.0749 (4)0.0453 (3)0.0069 (2)0.0010 (2)0.0180 (2)
Cl20.0699 (4)0.0693 (4)0.0948 (5)−0.0121 (3)0.0490 (3)0.0052 (3)
C1—C21.383 (3)C14—C151.388 (3)
C1—C61.390 (2)C14—H140.9300
C1—Cl11.7389 (18)C15—C161.373 (2)
C2—C31.374 (3)C15—H150.9300
C2—H20.9300C17—C251.530 (2)
C3—C41.368 (3)C17—C181.549 (2)
C3—Cl21.7381 (19)C18—C191.516 (2)
C4—C51.384 (2)C18—H18A0.9700
C4—H40.9300C18—H18B0.9700
C5—C61.393 (2)C19—C241.385 (2)
C5—H50.9300C19—C201.389 (2)
C6—C71.510 (2)C20—C211.375 (3)
C7—C81.525 (3)C20—H200.9300
C7—C171.580 (2)C21—C221.371 (3)
C7—H70.9800C21—H210.9300
C8—N11.455 (2)C22—C231.368 (3)
C8—H8A0.9700C22—H220.9300
C8—H8B0.9700C23—C241.382 (2)
C9—N11.463 (2)C23—H230.9300
C9—C161.509 (2)C24—H240.9300
C9—C101.564 (2)C25—O21.2045 (18)
C9—C171.599 (2)C25—O31.3262 (19)
C10—O11.214 (2)C26—O31.441 (2)
C10—N21.348 (2)C26—H26A0.9600
C11—C121.386 (3)C26—H26B0.9600
C11—C161.387 (2)C26—H26C0.9600
C11—N21.397 (3)C27—N11.462 (2)
C12—C131.374 (3)C27—H27A0.9600
C12—H120.9300C27—H27B0.9600
C13—C141.372 (3)C27—H27C0.9600
C13—H130.9300N2—H2A0.8600
C2—C1—C6122.86 (16)C15—C16—C9130.97 (15)
C2—C1—Cl1116.62 (14)C11—C16—C9109.45 (15)
C6—C1—Cl1120.50 (13)C25—C17—C18110.14 (12)
C3—C2—C1118.27 (17)C25—C17—C7109.87 (12)
C3—C2—H2120.9C18—C17—C7116.02 (13)
C1—C2—H2120.9C25—C17—C9106.29 (12)
C4—C3—C2121.40 (17)C18—C17—C9111.02 (11)
C4—C3—Cl2120.08 (15)C7—C17—C9102.90 (12)
C2—C3—Cl2118.51 (15)C19—C18—C17120.33 (12)
C3—C4—C5119.09 (17)C19—C18—H18A107.2
C3—C4—H4120.5C17—C18—H18A107.2
C5—C4—H4120.5C19—C18—H18B107.2
C4—C5—C6122.06 (17)C17—C18—H18B107.2
C4—C5—H5119.0H18A—C18—H18B106.9
C6—C5—H5119.0C24—C19—C20117.08 (15)
C1—C6—C5116.20 (16)C24—C19—C18125.91 (14)
C1—C6—C7122.15 (15)C20—C19—C18116.92 (14)
C5—C6—C7121.65 (15)C21—C20—C19121.67 (17)
C6—C7—C8113.87 (14)C21—C20—H20119.2
C6—C7—C17116.42 (13)C19—C20—H20119.2
C8—C7—C17105.41 (13)C22—C21—C20120.30 (17)
C6—C7—H7106.9C22—C21—H21119.8
C8—C7—H7106.9C20—C21—H21119.8
C17—C7—H7106.9C23—C22—C21119.14 (17)
N1—C8—C7104.15 (14)C23—C22—H22120.4
N1—C8—H8A110.9C21—C22—H22120.4
C7—C8—H8A110.9C22—C23—C24120.74 (17)
N1—C8—H8B110.9C22—C23—H23119.6
C7—C8—H8B110.9C24—C23—H23119.6
H8A—C8—H8B108.9C23—C24—C19121.04 (16)
N1—C9—C16111.63 (12)C23—C24—H24119.5
N1—C9—C10113.75 (13)C19—C24—H24119.5
C16—C9—C10100.84 (13)O2—C25—O3122.50 (14)
N1—C9—C17102.99 (12)O2—C25—C17125.52 (14)
C16—C9—C17118.08 (13)O3—C25—C17111.95 (12)
C10—C9—C17110.01 (12)O3—C26—H26A109.5
O1—C10—N2125.73 (16)O3—C26—H26B109.5
O1—C10—C9126.47 (17)H26A—C26—H26B109.5
N2—C10—C9107.80 (15)O3—C26—H26C109.5
C12—C11—C16121.71 (19)H26A—C26—H26C109.5
C12—C11—N2128.77 (18)H26B—C26—H26C109.5
C16—C11—N2109.43 (16)N1—C27—H27A109.5
C13—C12—C11117.9 (2)N1—C27—H27B109.5
C13—C12—H12121.1H27A—C27—H27B109.5
C11—C12—H12121.1N1—C27—H27C109.5
C14—C13—C12121.1 (2)H27A—C27—H27C109.5
C14—C13—H13119.5H27B—C27—H27C109.5
C12—C13—H13119.5C8—N1—C27112.88 (15)
C13—C14—C15120.8 (2)C8—N1—C9106.92 (13)
C13—C14—H14119.6C27—N1—C9114.79 (14)
C15—C14—H14119.6C10—N2—C11112.22 (14)
C16—C15—C14119.13 (18)C10—N2—H2A123.9
C16—C15—H15120.4C11—N2—H2A123.9
C14—C15—H15120.4C25—O3—C26116.46 (13)
C15—C16—C11119.43 (16)
C6—C1—C2—C30.7 (3)C8—C7—C17—C18118.92 (15)
Cl1—C1—C2—C3179.12 (14)C6—C7—C17—C9−129.76 (14)
C1—C2—C3—C42.4 (3)C8—C7—C17—C9−2.49 (16)
C1—C2—C3—Cl2−176.21 (14)N1—C9—C17—C2593.64 (13)
C2—C3—C4—C5−2.7 (3)C16—C9—C17—C25−29.85 (17)
Cl2—C3—C4—C5175.91 (15)C10—C9—C17—C25−144.76 (13)
C3—C4—C5—C6−0.1 (3)N1—C9—C17—C18−146.58 (13)
C2—C1—C6—C5−3.2 (3)C16—C9—C17—C1889.92 (16)
Cl1—C1—C6—C5178.40 (13)C10—C9—C17—C18−24.99 (18)
C2—C1—C6—C7176.31 (16)N1—C9—C17—C7−21.83 (14)
Cl1—C1—C6—C7−2.1 (2)C16—C9—C17—C7−145.33 (13)
C4—C5—C6—C12.9 (3)C10—C9—C17—C799.76 (14)
C4—C5—C6—C7−176.61 (17)C25—C17—C18—C19−64.72 (18)
C1—C6—C7—C8137.44 (17)C7—C17—C18—C1960.85 (19)
C5—C6—C7—C8−43.1 (2)C9—C17—C18—C19177.83 (13)
C1—C6—C7—C17−99.58 (18)C17—C18—C19—C2445.3 (2)
C5—C6—C7—C1779.9 (2)C17—C18—C19—C20−138.30 (16)
C6—C7—C8—N1155.06 (14)C24—C19—C20—C21−1.4 (3)
C17—C7—C8—N126.25 (17)C18—C19—C20—C21−178.13 (17)
N1—C9—C10—O154.9 (2)C19—C20—C21—C220.2 (3)
C16—C9—C10—O1174.51 (16)C20—C21—C22—C231.0 (3)
C17—C9—C10—O1−60.1 (2)C21—C22—C23—C24−1.0 (3)
N1—C9—C10—N2−124.69 (15)C22—C23—C24—C19−0.2 (3)
C16—C9—C10—N2−5.07 (16)C20—C19—C24—C231.3 (2)
C17—C9—C10—N2120.37 (14)C18—C19—C24—C23177.76 (16)
C16—C11—C12—C131.3 (3)C18—C17—C25—O2146.81 (16)
N2—C11—C12—C13−174.74 (19)C7—C17—C25—O217.8 (2)
C11—C12—C13—C14−0.2 (3)C9—C17—C25—O2−92.85 (18)
C12—C13—C14—C15−0.1 (3)C18—C17—C25—O3−35.14 (17)
C13—C14—C15—C16−0.7 (3)C7—C17—C25—O3−164.13 (12)
C14—C15—C16—C111.8 (2)C9—C17—C25—O385.20 (14)
C14—C15—C16—C9176.90 (16)C7—C8—N1—C27−169.79 (15)
C12—C11—C16—C15−2.2 (3)C7—C8—N1—C9−42.64 (17)
N2—C11—C16—C15174.60 (15)C16—C9—N1—C8167.99 (14)
C12—C11—C16—C9−178.24 (16)C10—C9—N1—C8−78.71 (17)
N2—C11—C16—C9−1.49 (19)C17—C9—N1—C840.32 (16)
N1—C9—C16—C15−50.5 (2)C16—C9—N1—C27−65.99 (18)
C10—C9—C16—C15−171.62 (17)C10—C9—N1—C2747.31 (19)
C17—C9—C16—C1568.6 (2)C17—C9—N1—C27166.33 (14)
N1—C9—C16—C11125.01 (14)O1—C10—N2—C11−174.94 (16)
C10—C9—C16—C113.87 (16)C9—C10—N2—C114.64 (19)
C17—C9—C16—C11−115.93 (15)C12—C11—N2—C10174.33 (18)
C6—C7—C17—C25117.36 (15)C16—C11—N2—C10−2.1 (2)
C8—C7—C17—C25−115.37 (14)O2—C25—O3—C26−1.2 (2)
C6—C7—C17—C18−8.4 (2)C17—C25—O3—C26−179.28 (14)
D—H···AD—HH···AD···AD—H···A
C18—H18B···O10.972.313.046 (2)132
C24—H24···O30.932.523.155 (2)126
N2—H2A···O2i0.862.072.924 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C18—H18B⋯O10.972.313.046 (2)132
C24—H24⋯O30.932.523.155 (2)126
N2—H2A⋯O2i 0.862.072.924 (2)170

Symmetry code: (i) .

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