Literature DB >> 24764993

1-Piperonylpiperazinium 4-chloro-benzoate.

Channappa N Kavitha1, Manpreet Kaur1, Brian J Anderson2, Jerry P Jasinski2, H S Yathirajan1.   

Abstract

In the title salt {systematic name: 1-[(1,3-benzodioxol-5-yl)meth-yl]piperazin-1-ium 4-chloro-benzoate}, C12H17N2O2 (+)·C7H4ClO2 (-), the piperazine ring adopts a slightly disordered chair conformation. The dioxole ring is in a flattened envelope conformation with the methyl-ene C atom forming the flap. The relative orientation of the piperonyl ring system and the piperazine rings is reflected in the N-C-C C torsion angle of 132.3 (1)°. In the anion, the mean plane of the carboxyl-ate group is twisted from that of the benzene ring by 14.8 (9)°. In the crystal, the components are linked by N-H⋯O and weak C-H⋯O hydrogen bonds, forming chains along [010].

Entities:  

Year:  2014        PMID: 24764993      PMCID: PMC3998456          DOI: 10.1107/S1600536814002037

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related compounds, see: Brockunier et al. (2004 ▶); Bogatcheva et al. (2006 ▶); Elliott (2011 ▶); Gilbert et al. (1968 ▶); Gobert et al. (2003 ▶); Millan et al. (2001 ▶). For a related structure, see: Capuano et al. (2000 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C12H17N2O2C7H4ClO2 M = 376.83 Monoclinic, a = 16.9967 (6) Å b = 8.5990 (3) Å c = 12.4150 (5) Å β = 90.923 (3)° V = 1814.27 (12) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 173 K 0.48 × 0.26 × 0.18 mm

Data collection

Agilent Gemini EOS diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.787, T max = 1.000 22917 measured reflections 6302 independent reflections 4472 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.120 S = 1.04 6302 reflections 235 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) in OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814002037/lh5687sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002037/lh5687Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002037/lh5687Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H17N2O2+·C7H4ClO2F(000) = 792
Mr = 376.83Dx = 1.380 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 16.9967 (6) ÅCell parameters from 5056 reflections
b = 8.5990 (3) Åθ = 3.1–32.8°
c = 12.4150 (5) ŵ = 0.24 mm1
β = 90.923 (3)°T = 173 K
V = 1814.27 (12) Å3Irregular, light yellow
Z = 40.48 × 0.26 × 0.18 mm
Agilent Gemini EOS diffractometer6302 independent reflections
Radiation source: Enhance (Mo) X-ray Source4472 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.033
ω scansθmax = 32.8°, θmin = 3.1°
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)h = −21→25
Tmin = 0.787, Tmax = 1.000k = −12→12
22917 measured reflectionsl = −17→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.120w = 1/[σ2(Fo2) + (0.0455P)2 + 0.5274P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
6302 reflectionsΔρmax = 0.30 e Å3
235 parametersΔρmin = −0.32 e Å3
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O1A0.46343 (6)0.65641 (14)0.06488 (9)0.0439 (3)
O2A0.55838 (7)0.84302 (13)0.03707 (9)0.0452 (3)
N1A0.79257 (6)0.70236 (13)0.30762 (9)0.0280 (2)
N2A0.95243 (6)0.60800 (13)0.27472 (10)0.0298 (2)
H2AA0.95900.52930.32180.036*
H2AB0.99780.62090.23950.036*
C1A0.71612 (8)0.69075 (19)0.35969 (12)0.0360 (3)
H1AA0.70720.78430.40140.043*
H1AB0.71700.60330.40900.043*
C2A0.64927 (8)0.66996 (16)0.27979 (11)0.0301 (3)
C3A0.64318 (8)0.77080 (16)0.19132 (11)0.0321 (3)
H3A0.68100.84660.17890.039*
C4A0.57955 (8)0.75298 (16)0.12438 (11)0.0304 (3)
C5A0.49379 (11)0.7623 (2)−0.01222 (14)0.0474 (4)
H5AA0.45330.8355−0.03460.057*
H5AB0.51130.7063−0.07530.057*
C6A0.52267 (8)0.64112 (17)0.14120 (11)0.0312 (3)
C7A0.52767 (9)0.54095 (18)0.22546 (12)0.0373 (3)
H7A0.48950.46540.23670.045*
C8A0.59275 (9)0.55669 (18)0.29434 (12)0.0352 (3)
H8A0.59830.48850.35210.042*
C9A0.85456 (8)0.73757 (16)0.38737 (11)0.0305 (3)
H9AA0.85700.65530.44080.037*
H9AB0.84220.83400.42390.037*
C10A0.93326 (8)0.75244 (15)0.33388 (12)0.0313 (3)
H10A0.93200.83950.28420.038*
H10B0.97380.77270.38800.038*
C11A0.88861 (8)0.56853 (18)0.19658 (12)0.0349 (3)
H11A0.90030.47010.16210.042*
H11B0.88540.64790.14120.042*
C12A0.81076 (8)0.55708 (16)0.25287 (12)0.0316 (3)
H12A0.76950.53360.20050.038*
H12B0.81290.47300.30490.038*
Cl1B0.33436 (2)0.68123 (5)0.27279 (3)0.04524 (12)
O1B0.02434 (6)0.65334 (11)0.59960 (8)0.0335 (2)
O2B0.07906 (6)0.87721 (13)0.65085 (9)0.0411 (3)
C1B0.14214 (7)0.73384 (14)0.51518 (10)0.0255 (2)
C2B0.21013 (8)0.82354 (16)0.52310 (12)0.0308 (3)
H2B0.21520.89660.57800.037*
C3B0.27034 (8)0.80532 (16)0.45013 (12)0.0339 (3)
H3B0.31610.86420.45620.041*
C4B0.26105 (8)0.69800 (16)0.36822 (11)0.0310 (3)
C5B0.19465 (8)0.60586 (16)0.35906 (11)0.0311 (3)
H5B0.18970.53330.30380.037*
C6B0.13543 (8)0.62363 (15)0.43395 (11)0.0284 (3)
H6B0.09090.56100.42960.034*
C7B0.07682 (8)0.75601 (15)0.59450 (11)0.0275 (3)
U11U22U33U12U13U23
O1A0.0290 (5)0.0598 (7)0.0426 (6)−0.0056 (5)−0.0065 (4)0.0000 (5)
O2A0.0446 (6)0.0445 (6)0.0461 (6)−0.0058 (5)−0.0140 (5)0.0112 (5)
N1A0.0247 (5)0.0295 (5)0.0297 (6)0.0009 (4)−0.0029 (4)−0.0040 (4)
N2A0.0248 (5)0.0248 (5)0.0398 (6)0.0004 (4)−0.0013 (4)0.0035 (5)
C1A0.0289 (7)0.0482 (9)0.0310 (7)0.0017 (6)0.0001 (5)−0.0022 (6)
C2A0.0243 (6)0.0350 (7)0.0311 (6)0.0031 (5)0.0028 (5)−0.0031 (5)
C3A0.0278 (6)0.0295 (7)0.0391 (7)−0.0028 (5)0.0005 (5)−0.0004 (5)
C4A0.0292 (6)0.0292 (6)0.0328 (7)0.0029 (5)0.0012 (5)−0.0007 (5)
C5A0.0497 (10)0.0517 (10)0.0403 (8)−0.0057 (8)−0.0118 (7)−0.0001 (7)
C6A0.0226 (6)0.0374 (7)0.0337 (7)0.0002 (5)0.0022 (5)−0.0067 (6)
C7A0.0312 (7)0.0422 (8)0.0387 (8)−0.0097 (6)0.0072 (6)−0.0005 (6)
C8A0.0341 (7)0.0399 (8)0.0317 (7)−0.0015 (6)0.0058 (5)0.0035 (6)
C9A0.0309 (7)0.0293 (6)0.0310 (6)0.0010 (5)−0.0055 (5)−0.0025 (5)
C10A0.0287 (6)0.0239 (6)0.0411 (7)−0.0019 (5)−0.0072 (5)−0.0013 (5)
C11A0.0304 (7)0.0355 (7)0.0385 (7)0.0033 (5)−0.0030 (6)−0.0084 (6)
C12A0.0276 (6)0.0276 (6)0.0393 (7)−0.0002 (5)−0.0049 (5)−0.0056 (5)
Cl1B0.0359 (2)0.0490 (2)0.0512 (2)−0.00034 (16)0.01216 (16)0.00508 (18)
O1B0.0296 (5)0.0288 (5)0.0421 (6)−0.0036 (4)0.0024 (4)0.0014 (4)
O2B0.0365 (6)0.0362 (5)0.0509 (6)−0.0063 (4)0.0073 (5)−0.0127 (5)
C1B0.0249 (6)0.0224 (6)0.0289 (6)0.0012 (4)−0.0045 (5)0.0052 (5)
C2B0.0282 (6)0.0271 (6)0.0369 (7)−0.0019 (5)−0.0059 (5)−0.0003 (5)
C3B0.0250 (6)0.0303 (7)0.0463 (8)−0.0035 (5)−0.0036 (5)0.0042 (6)
C4B0.0248 (6)0.0321 (7)0.0362 (7)0.0033 (5)0.0005 (5)0.0084 (5)
C5B0.0299 (6)0.0313 (7)0.0322 (7)0.0020 (5)−0.0043 (5)−0.0003 (5)
C6B0.0240 (6)0.0281 (6)0.0330 (7)−0.0018 (5)−0.0052 (5)0.0030 (5)
C7B0.0261 (6)0.0253 (6)0.0309 (6)0.0024 (5)−0.0046 (5)0.0031 (5)
O1A—C5A1.424 (2)C9A—H9AA0.9700
O1A—C6A1.3777 (17)C9A—H9AB0.9700
O2A—C4A1.3753 (17)C9A—C10A1.508 (2)
O2A—C5A1.4281 (19)C10A—H10A0.9700
N1A—C1A1.4640 (17)C10A—H10B0.9700
N1A—C9A1.4658 (16)C11A—H11A0.9700
N1A—C12A1.4578 (17)C11A—H11B0.9700
N2A—H2AA0.9000C11A—C12A1.510 (2)
N2A—H2AB0.9000C12A—H12A0.9700
N2A—C10A1.4818 (17)C12A—H12B0.9700
N2A—C11A1.4829 (18)Cl1B—C4B1.7391 (14)
C1A—H1AA0.9700O1B—C7B1.2573 (16)
C1A—H1AB0.9700O2B—C7B1.2554 (16)
C1A—C2A1.5069 (19)C1B—C2B1.3916 (18)
C2A—C3A1.4019 (19)C1B—C6B1.3873 (18)
C2A—C8A1.382 (2)C1B—C7B1.5079 (18)
C3A—H3A0.9300C2B—H2B0.9300
C3A—C4A1.3619 (19)C2B—C3B1.386 (2)
C4A—C6A1.3820 (19)C3B—H3B0.9300
C5A—H5AA0.9700C3B—C4B1.380 (2)
C5A—H5AB0.9700C4B—C5B1.382 (2)
C6A—C7A1.357 (2)C5B—H5B0.9300
C7A—H7A0.9300C5B—C6B1.3896 (19)
C7A—C8A1.394 (2)C6B—H6B0.9300
C8A—H8A0.9300
C6A—O1A—C5A104.75 (11)N1A—C9A—C10A110.67 (11)
C4A—O2A—C5A104.70 (12)H9AA—C9A—H9AB108.1
C1A—N1A—C9A110.44 (11)C10A—C9A—H9AA109.5
C12A—N1A—C1A110.11 (11)C10A—C9A—H9AB109.5
C12A—N1A—C9A109.66 (10)N2A—C10A—C9A110.53 (11)
H2AA—N2A—H2AB108.1N2A—C10A—H10A109.5
C10A—N2A—H2AA109.5N2A—C10A—H10B109.5
C10A—N2A—H2AB109.5C9A—C10A—H10A109.5
C10A—N2A—C11A110.60 (10)C9A—C10A—H10B109.5
C11A—N2A—H2AA109.5H10A—C10A—H10B108.1
C11A—N2A—H2AB109.5N2A—C11A—H11A109.6
N1A—C1A—H1AA109.1N2A—C11A—H11B109.6
N1A—C1A—H1AB109.1N2A—C11A—C12A110.45 (12)
N1A—C1A—C2A112.49 (11)H11A—C11A—H11B108.1
H1AA—C1A—H1AB107.8C12A—C11A—H11A109.6
C2A—C1A—H1AA109.1C12A—C11A—H11B109.6
C2A—C1A—H1AB109.1N1A—C12A—C11A110.74 (11)
C3A—C2A—C1A119.20 (13)N1A—C12A—H12A109.5
C8A—C2A—C1A121.06 (13)N1A—C12A—H12B109.5
C8A—C2A—C3A119.71 (13)C11A—C12A—H12A109.5
C2A—C3A—H3A121.4C11A—C12A—H12B109.5
C4A—C3A—C2A117.16 (13)H12A—C12A—H12B108.1
C4A—C3A—H3A121.4C2B—C1B—C7B120.21 (12)
O2A—C4A—C6A109.64 (12)C6B—C1B—C2B119.24 (12)
C3A—C4A—O2A127.79 (13)C6B—C1B—C7B120.56 (11)
C3A—C4A—C6A122.46 (13)C1B—C2B—H2B119.6
O1A—C5A—O2A107.89 (12)C3B—C2B—C1B120.80 (13)
O1A—C5A—H5AA110.1C3B—C2B—H2B119.6
O1A—C5A—H5AB110.1C2B—C3B—H3B120.7
O2A—C5A—H5AA110.1C4B—C3B—C2B118.69 (13)
O2A—C5A—H5AB110.1C4B—C3B—H3B120.7
H5AA—C5A—H5AB108.4C3B—C4B—Cl1B118.85 (11)
O1A—C6A—C4A109.57 (13)C3B—C4B—C5B121.83 (13)
C7A—C6A—O1A128.82 (13)C5B—C4B—Cl1B119.31 (11)
C7A—C6A—C4A121.54 (13)C4B—C5B—H5B120.6
C6A—C7A—H7A121.6C4B—C5B—C6B118.77 (13)
C6A—C7A—C8A116.78 (13)C6B—C5B—H5B120.6
C8A—C7A—H7A121.6C1B—C6B—C5B120.64 (12)
C2A—C8A—C7A122.33 (14)C1B—C6B—H6B119.7
C2A—C8A—H8A118.8C5B—C6B—H6B119.7
C7A—C8A—H8A118.8O1B—C7B—C1B118.33 (12)
N1A—C9A—H9AA109.5O2B—C7B—O1B124.75 (13)
N1A—C9A—H9AB109.5O2B—C7B—C1B116.92 (12)
O1A—C6A—C7A—C8A−176.43 (14)C6A—C7A—C8A—C2A1.1 (2)
O2A—C4A—C6A—O1A0.07 (16)C8A—C2A—C3A—C4A1.3 (2)
O2A—C4A—C6A—C7A−177.15 (13)C9A—N1A—C1A—C2A174.49 (12)
N1A—C1A—C2A—C3A−49.87 (18)C9A—N1A—C12A—C11A−59.59 (14)
N1A—C1A—C2A—C8A132.26 (14)C10A—N2A—C11A—C12A−55.32 (15)
N1A—C9A—C10A—N2A−57.53 (14)C11A—N2A—C10A—C9A55.29 (14)
N2A—C11A—C12A—N1A57.83 (15)C12A—N1A—C1A—C2A−64.26 (15)
C1A—N1A—C9A—C10A−179.02 (11)C12A—N1A—C9A—C10A59.46 (14)
C1A—N1A—C12A—C11A178.69 (11)Cl1B—C4B—C5B—C6B−178.09 (10)
C1A—C2A—C3A—C4A−176.59 (13)C1B—C2B—C3B—C4B1.0 (2)
C1A—C2A—C8A—C7A175.95 (13)C2B—C1B—C6B—C5B−2.03 (19)
C2A—C3A—C4A—O2A175.68 (13)C2B—C1B—C7B—O1B−165.32 (12)
C2A—C3A—C4A—C6A0.0 (2)C2B—C1B—C7B—O2B14.80 (18)
C3A—C2A—C8A—C7A−1.9 (2)C2B—C3B—C4B—Cl1B177.00 (10)
C3A—C4A—C6A—O1A176.46 (13)C2B—C3B—C4B—C5B−1.9 (2)
C3A—C4A—C6A—C7A−0.8 (2)C3B—C4B—C5B—C6B0.8 (2)
C4A—O2A—C5A—O1A18.16 (18)C4B—C5B—C6B—C1B1.22 (19)
C4A—C6A—C7A—C8A0.2 (2)C6B—C1B—C2B—C3B0.89 (19)
C5A—O1A—C6A—C4A11.18 (16)C6B—C1B—C7B—O1B14.36 (18)
C5A—O1A—C6A—C7A−171.86 (16)C6B—C1B—C7B—O2B−165.52 (12)
C5A—O2A—C4A—C3A172.60 (15)C7B—C1B—C2B—C3B−179.42 (12)
C5A—O2A—C4A—C6A−11.25 (16)C7B—C1B—C6B—C5B178.29 (11)
C6A—O1A—C5A—O2A−18.11 (17)
D—H···AD—HH···AD···AD—H···A
N2A—H2AA···O1Bi0.901.872.7606 (15)171
N2A—H2AB···O2Bii0.901.782.6684 (16)169
C10A—H10A···O2Biii0.972.573.1974 (17)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2A—H2AA⋯O1B i 0.901.872.7606 (15)171
N2A—H2AB⋯O2B ii 0.901.782.6684 (16)169
C10A—H10A⋯O2B iii 0.972.573.1974 (17)122

Symmetry codes: (i) ; (ii) ; (iii) .

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