Literature DB >> 24764989

9-(2,4-Di-fluoro-phen-yl)-3,3,6,6-tetra-methyl-3,4,5,6,7,9-hexa-hydro-2H-xanthene-1,8-dione.

S Rizwana Begum1, R Hema2, G Sumathi3, R Valliappan4, N Srinivasan5.   

Abstract

In the title compound, C23H24F2O3, the central pyran ring has a flat-boat conformation, whereas the two fused cyclo-hexenone rings adopt envelope conformations, with the C atom bearing the dimethyl substituent being the flap atom in each case. The pyran ring mean plane and the di-fluoro-phenyl ring are almost normal to each other, making a dihedral angle of 87.55 (4)°. In the crystal, mol-ecules are linked by pairs of C-H⋯O hydrogen bonds, forming inversion dimers with an R 2 (2)(8) ring motif. The F atom at position 2 on the di-fluoro-phenyl ring is disordered over the 2- and 6-positions, and has a refined occupancy ratio of 0.932 (3):0.068 (3).

Entities:  

Year:  2014        PMID: 24764989      PMCID: PMC3998450          DOI: 10.1107/S1600536814002761

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of xanthenes, see: Vanag & Stankevich (1960 ▶); Hilderbrand & Weissleder (2007 ▶). For their pharmaceutical properties, see: Jonathan et al. (1988 ▶); Lambert et al. (1997 ▶); Poupelin et al. (1978 ▶); Hideo (1981 ▶); Selvanayagam et al. (1996 ▶). For related structures, see: Sughanya & Sureshbabu (2012 ▶); Sureshbabu & Sughanya (2013 ▶). For ring conformation analysis, see: Cremer & Pople (1975 ▶). For hydrogen-bonding graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H24F2O3 M = 386.42 Triclinic, a = 9.6810 (4) Å b = 10.4290 (4) Å c = 11.8840 (5) Å α = 69.288 (2)° β = 74.895 (2)° γ = 63.406 (2)° V = 996.03 (7) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.972, T max = 0.981 23107 measured reflections 6738 independent reflections 4248 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.147 S = 1.03 6738 reflections 267 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814002761/su2696sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002761/su2696Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002761/su2696Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H24F2O3Z = 2
Mr = 386.42F(000) = 408
Triclinic, P1Dx = 1.288 Mg m3
a = 9.6810 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.4290 (4) ÅCell parameters from 8029 reflections
c = 11.8840 (5) Åθ = 2.8–30.5°
α = 69.288 (2)°µ = 0.10 mm1
β = 74.895 (2)°T = 293 K
γ = 63.406 (2)°Block, colourless
V = 996.03 (7) Å30.30 × 0.20 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer6738 independent reflections
Radiation source: fine-focus sealed tube4248 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
ω and φ scanθmax = 31.9°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −9→14
Tmin = 0.972, Tmax = 0.981k = −10→15
23107 measured reflectionsl = −17→17
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.0674P)2 + 0.1104P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
6738 reflectionsΔρmax = 0.24 e Å3
267 parametersΔρmin = −0.18 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
F10.58177 (9)0.33825 (10)0.21213 (9)0.0634 (3)0.932 (3)
F1'1.0560 (15)0.0461 (17)0.3554 (14)0.078 (5)0.068 (3)
F20.72300 (13)0.44738 (12)0.50286 (9)0.0828 (3)
O10.84119 (12)−0.15460 (12)0.39286 (9)0.0627 (3)
O20.65242 (9)0.17594 (9)0.02533 (7)0.0434 (2)
O31.11867 (11)0.17515 (13)0.07618 (10)0.0686 (3)
C10.74840 (14)−0.10446 (13)0.32037 (11)0.0420 (3)
C20.63396 (15)−0.17246 (15)0.33580 (11)0.0473 (3)
H2A0.6041−0.20870.42180.057*
H2B0.6856−0.25780.30290.057*
C30.48605 (14)−0.06656 (14)0.27502 (11)0.0435 (3)
C40.53389 (14)0.00773 (14)0.14367 (11)0.0430 (3)
H4A0.5750−0.06430.09710.052*
H4B0.44240.08910.10940.052*
C50.65262 (13)0.06655 (12)0.13208 (10)0.0373 (2)
C60.75128 (12)0.01894 (12)0.21271 (10)0.0371 (2)
C70.86725 (12)0.08662 (13)0.19491 (10)0.0381 (2)
H70.96920.00510.20970.046*
C80.87933 (12)0.17859 (13)0.06498 (10)0.0380 (2)
C91.01106 (13)0.22456 (14)0.01719 (12)0.0465 (3)
C101.01073 (15)0.32985 (16)−0.10760 (13)0.0549 (3)
H10A1.07360.2719−0.16460.066*
H10B1.06050.3935−0.10990.066*
C110.85044 (15)0.42923 (14)−0.15076 (12)0.0476 (3)
C120.76661 (16)0.32723 (14)−0.13191 (11)0.0467 (3)
H12A0.65870.3880−0.14540.056*
H12B0.81430.2703−0.19110.056*
C130.77272 (13)0.22295 (13)−0.00826 (10)0.0386 (2)
C140.38365 (17)0.05031 (19)0.34291 (15)0.0644 (4)
H14A0.44060.10520.34370.097*
H14B0.35320.00200.42460.097*
H14C0.29250.11740.30320.097*
C150.39565 (18)−0.15434 (18)0.27371 (14)0.0616 (4)
H15A0.3623−0.19990.35550.092*
H15B0.4616−0.23020.23330.092*
H15C0.3064−0.08800.23160.092*
C160.75801 (18)0.54296 (16)−0.07819 (15)0.0622 (4)
H16A0.65540.6002−0.10240.093*
H16B0.80980.6083−0.09310.093*
H16C0.75060.49200.00660.093*
C170.8681 (2)0.51037 (19)−0.28546 (14)0.0716 (4)
H17A0.76710.5682−0.31250.107*
H17B0.92870.4387−0.33080.107*
H17C0.91960.5752−0.29760.107*
C180.82627 (12)0.18056 (13)0.28097 (10)0.0375 (2)
C190.92946 (14)0.15185 (14)0.35771 (11)0.0431 (3)
H191.02390.06990.35890.052*0.932 (3)
C200.89720 (16)0.24020 (16)0.43221 (12)0.0514 (3)
H200.96830.21900.48250.062*
C210.75792 (18)0.35938 (16)0.42986 (12)0.0528 (3)
C220.64974 (16)0.39404 (15)0.35770 (13)0.0540 (3)
H220.55490.47530.35800.065*
C230.68774 (14)0.30316 (14)0.28486 (11)0.0454 (3)
H230.61570.32550.23500.054*0.068 (3)
U11U22U33U12U13U23
F10.0438 (5)0.0656 (6)0.0797 (7)0.0015 (4)−0.0322 (4)−0.0315 (5)
F1'0.058 (8)0.079 (10)0.093 (11)−0.011 (7)−0.035 (7)−0.023 (8)
F20.1159 (8)0.0833 (7)0.0739 (6)−0.0448 (6)−0.0094 (6)−0.0435 (5)
O10.0698 (6)0.0637 (6)0.0568 (6)−0.0285 (5)−0.0337 (5)0.0026 (5)
O20.0467 (4)0.0482 (5)0.0423 (4)−0.0277 (4)−0.0157 (4)−0.0010 (4)
O30.0419 (5)0.0823 (7)0.0837 (7)−0.0312 (5)−0.0171 (5)−0.0095 (6)
C10.0434 (6)0.0413 (6)0.0406 (6)−0.0136 (5)−0.0113 (5)−0.0101 (5)
C20.0513 (7)0.0478 (7)0.0417 (6)−0.0244 (6)−0.0080 (5)−0.0031 (5)
C30.0430 (6)0.0481 (7)0.0434 (6)−0.0237 (5)−0.0058 (5)−0.0090 (5)
C40.0473 (6)0.0493 (7)0.0423 (6)−0.0274 (5)−0.0126 (5)−0.0076 (5)
C50.0407 (6)0.0386 (6)0.0369 (6)−0.0189 (5)−0.0086 (4)−0.0081 (5)
C60.0359 (5)0.0389 (6)0.0401 (6)−0.0151 (5)−0.0085 (4)−0.0116 (5)
C70.0308 (5)0.0386 (6)0.0460 (6)−0.0105 (4)−0.0119 (4)−0.0121 (5)
C80.0329 (5)0.0390 (6)0.0450 (6)−0.0139 (4)−0.0050 (4)−0.0149 (5)
C90.0343 (5)0.0485 (7)0.0593 (8)−0.0164 (5)−0.0029 (5)−0.0197 (6)
C100.0447 (7)0.0595 (8)0.0625 (8)−0.0281 (6)0.0038 (6)−0.0163 (7)
C110.0523 (7)0.0446 (7)0.0515 (7)−0.0272 (6)−0.0044 (6)−0.0101 (6)
C120.0575 (7)0.0482 (7)0.0432 (7)−0.0290 (6)−0.0103 (5)−0.0086 (5)
C130.0394 (6)0.0396 (6)0.0425 (6)−0.0192 (5)−0.0056 (5)−0.0124 (5)
C140.0524 (8)0.0734 (10)0.0679 (9)−0.0223 (7)0.0030 (7)−0.0303 (8)
C150.0641 (9)0.0684 (9)0.0636 (9)−0.0449 (8)−0.0104 (7)−0.0041 (7)
C160.0664 (9)0.0459 (7)0.0798 (10)−0.0208 (7)−0.0154 (8)−0.0208 (7)
C170.0896 (12)0.0714 (10)0.0602 (9)−0.0517 (10)−0.0078 (8)0.0005 (8)
C180.0352 (5)0.0392 (6)0.0417 (6)−0.0159 (5)−0.0115 (4)−0.0085 (5)
C190.0396 (6)0.0474 (7)0.0462 (6)−0.0201 (5)−0.0148 (5)−0.0065 (5)
C200.0622 (8)0.0639 (8)0.0438 (7)−0.0379 (7)−0.0165 (6)−0.0080 (6)
C210.0731 (9)0.0549 (8)0.0443 (7)−0.0352 (7)−0.0045 (6)−0.0180 (6)
C220.0556 (8)0.0455 (7)0.0578 (8)−0.0127 (6)−0.0085 (6)−0.0191 (6)
C230.0411 (6)0.0476 (7)0.0489 (7)−0.0130 (5)−0.0157 (5)−0.0136 (5)
F1—C231.3549 (13)C11—C161.5239 (19)
F1'—C191.230 (14)C11—C171.5287 (19)
F2—C211.3571 (15)C11—C121.5330 (16)
O1—C11.2193 (14)C12—C131.4843 (17)
O2—C51.3735 (13)C12—H12A0.9700
O2—C131.3736 (13)C12—H12B0.9700
O3—C91.2193 (15)C14—H14A0.9600
C1—C61.4638 (16)C14—H14B0.9600
C1—C21.5065 (17)C14—H14C0.9600
C2—C31.5332 (17)C15—H15A0.9600
C2—H2A0.9700C15—H15B0.9600
C2—H2B0.9700C15—H15C0.9600
C3—C141.522 (2)C16—H16A0.9600
C3—C151.5292 (17)C16—H16B0.9600
C3—C41.5299 (17)C16—H16C0.9600
C4—C51.4851 (15)C17—H17A0.9600
C4—H4A0.9700C17—H17B0.9600
C4—H4B0.9700C17—H17C0.9600
C5—C61.3389 (14)C18—C231.3819 (17)
C6—C71.5112 (14)C18—C191.3904 (14)
C7—C81.5089 (16)C19—C201.3804 (18)
C7—C181.5207 (16)C19—H190.9300
C7—H70.9800C20—C211.363 (2)
C8—C131.3388 (15)C20—H200.9300
C8—C91.4684 (15)C21—C221.3685 (19)
C9—C101.5009 (19)C22—C231.3730 (18)
C10—C111.5310 (19)C22—H220.9300
C10—H10A0.9700C23—H230.9300
C10—H10B0.9700
C5—O2—C13118.21 (8)C11—C12—H12A109.2
O1—C1—C6120.42 (11)C13—C12—H12B109.2
O1—C1—C2121.07 (11)C11—C12—H12B109.2
C6—C1—C2118.44 (9)H12A—C12—H12B107.9
C1—C2—C3114.85 (10)C8—C13—O2122.43 (10)
C1—C2—H2A108.6C8—C13—C12125.78 (10)
C3—C2—H2A108.6O2—C13—C12111.79 (9)
C1—C2—H2B108.6C3—C14—H14A109.5
C3—C2—H2B108.6C3—C14—H14B109.5
H2A—C2—H2B107.5H14A—C14—H14B109.5
C14—C3—C15109.58 (11)C3—C14—H14C109.5
C14—C3—C4110.53 (11)H14A—C14—H14C109.5
C15—C3—C4108.14 (10)H14B—C14—H14C109.5
C14—C3—C2110.07 (11)C3—C15—H15A109.5
C15—C3—C2110.10 (11)C3—C15—H15B109.5
C4—C3—C2108.39 (10)H15A—C15—H15B109.5
C5—C4—C3113.01 (9)C3—C15—H15C109.5
C5—C4—H4A109.0H15A—C15—H15C109.5
C3—C4—H4A109.0H15B—C15—H15C109.5
C5—C4—H4B109.0C11—C16—H16A109.5
C3—C4—H4B109.0C11—C16—H16B109.5
H4A—C4—H4B107.8H16A—C16—H16B109.5
C6—C5—O2123.04 (9)C11—C16—H16C109.5
C6—C5—C4125.44 (10)H16A—C16—H16C109.5
O2—C5—C4111.51 (9)H16B—C16—H16C109.5
C5—C6—C1118.82 (10)C11—C17—H17A109.5
C5—C6—C7122.11 (10)C11—C17—H17B109.5
C1—C6—C7119.06 (9)H17A—C17—H17B109.5
C8—C7—C6108.90 (9)C11—C17—H17C109.5
C8—C7—C18110.47 (9)H17A—C17—H17C109.5
C6—C7—C18113.06 (9)H17B—C17—H17C109.5
C8—C7—H7108.1C23—C18—C19115.53 (11)
C6—C7—H7108.1C23—C18—C7122.63 (9)
C18—C7—H7108.1C19—C18—C7121.79 (10)
C13—C8—C9118.38 (11)F1'—C19—C20119.4 (6)
C13—C8—C7122.62 (10)F1'—C19—C18118.0 (7)
C9—C8—C7118.98 (10)C20—C19—C18122.57 (12)
O3—C9—C8120.69 (12)C20—C19—H19118.7
O3—C9—C10121.52 (11)C18—C19—H19118.7
C8—C9—C10117.76 (10)C21—C20—C19117.98 (11)
C9—C10—C11115.71 (10)C21—C20—H20121.0
C9—C10—H10A108.4C19—C20—H20121.0
C11—C10—H10A108.4F2—C21—C20119.12 (12)
C9—C10—H10B108.4F2—C21—C22118.00 (13)
C11—C10—H10B108.4C20—C21—C22122.88 (12)
H10A—C10—H10B107.4C21—C22—C23116.87 (12)
C16—C11—C17109.55 (12)C21—C22—H22121.6
C16—C11—C10110.27 (11)C23—C22—H22121.6
C17—C11—C10110.20 (12)F1—C23—C22117.04 (11)
C16—C11—C12110.34 (11)F1—C23—C18118.79 (11)
C17—C11—C12109.15 (11)C22—C23—C18124.17 (11)
C10—C11—C12107.29 (10)C22—C23—H23117.9
C13—C12—C11112.16 (10)C18—C23—H23117.9
C13—C12—H12A109.2
O1—C1—C2—C3155.46 (12)C9—C10—C11—C1668.74 (15)
C6—C1—C2—C3−27.60 (16)C9—C10—C11—C17−170.19 (12)
C1—C2—C3—C14−70.82 (14)C9—C10—C11—C12−51.47 (15)
C1—C2—C3—C15168.27 (11)C16—C11—C12—C13−70.88 (14)
C1—C2—C3—C450.17 (14)C17—C11—C12—C13168.68 (12)
C14—C3—C4—C573.46 (13)C10—C11—C12—C1349.28 (14)
C15—C3—C4—C5−166.59 (11)C9—C8—C13—O2174.81 (10)
C2—C3—C4—C5−47.24 (14)C7—C8—C13—O2−6.63 (17)
C13—O2—C5—C69.76 (16)C9—C8—C13—C12−5.94 (18)
C13—O2—C5—C4−168.91 (10)C7—C8—C13—C12172.62 (11)
C3—C4—C5—C623.38 (17)C5—O2—C13—C8−7.66 (16)
C3—C4—C5—O2−157.99 (10)C5—O2—C13—C12173.00 (10)
O2—C5—C6—C1−176.36 (10)C11—C12—C13—C8−23.44 (18)
C4—C5—C6—C12.12 (18)C11—C12—C13—O2155.88 (10)
O2—C5—C6—C72.50 (18)C8—C7—C18—C2363.24 (14)
C4—C5—C6—C7−179.02 (11)C6—C7—C18—C23−59.07 (15)
O1—C1—C6—C5176.86 (12)C8—C7—C18—C19−114.03 (11)
C2—C1—C6—C5−0.10 (17)C6—C7—C18—C19123.66 (11)
O1—C1—C6—C7−2.04 (17)C23—C18—C19—F1'−178.2 (9)
C2—C1—C6—C7−179.00 (10)C7—C18—C19—F1'−0.8 (9)
C5—C6—C7—C8−14.60 (15)C23—C18—C19—C20−0.60 (18)
C1—C6—C7—C8164.25 (10)C7—C18—C19—C20176.85 (11)
C5—C6—C7—C18108.58 (12)F1'—C19—C20—C21177.9 (9)
C1—C6—C7—C18−72.56 (13)C18—C19—C20—C210.34 (19)
C6—C7—C8—C1316.67 (15)C19—C20—C21—F2179.57 (11)
C18—C7—C8—C13−108.05 (12)C19—C20—C21—C220.3 (2)
C6—C7—C8—C9−164.77 (10)F2—C21—C22—C23−179.89 (12)
C18—C7—C8—C970.50 (12)C20—C21—C22—C23−0.6 (2)
C13—C8—C9—O3−172.78 (12)C21—C22—C23—F1−179.17 (12)
C7—C8—C9—O38.60 (18)C21—C22—C23—C180.3 (2)
C13—C8—C9—C105.27 (17)C19—C18—C23—F1179.75 (11)
C7—C8—C9—C10−173.35 (11)C7—C18—C23—F12.32 (18)
O3—C9—C10—C11−156.79 (13)C19—C18—C23—C220.26 (19)
C8—C9—C10—C1125.18 (17)C7—C18—C23—C22−177.17 (12)
D—H···AD—HH···AD···AD—H···A
C20—H20···O1i0.932.383.3075 (15)177
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C20—H20⋯O1i 0.932.383.3075 (15)177

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ehretianone, a novel quinonoid xanthene from Ehretia buxifolia with antisnake venom activity.

Authors:  Z E Selvanayagam; S G Gnanavendhan; K Balakrishna; R B Rao; J Sivaraman; K Subramanian; R Puri; R K Puri
Journal:  J Nat Prod       Date:  1996-07       Impact factor: 4.050

3.  One-Pot Synthesis of New Symmetric and Asymmetric Xanthene Dyes.

Authors:  Scott A Hilderbrand; Ralph Weissleder
Journal:  Tetrahedron Lett       Date:  2007-06-18       Impact factor: 2.415

4.  9-(2,4-Dinitro-phen-yl)-3,3,6,6-tetra-methyl-3,4,5,6,7,9-hexa-hydro-1H-xanthene-1,8(2H)-dione.

Authors:  N Sureshbabu; V Sughanya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-23

5.  9-(4-Hy-droxy-3,5-dimeth-oxy-phen-yl)-3,3,6,6-tetra-methyl-3,4,5,6,7,9-hexa-hydro-1H-xanthene-1,8(2H)-dione.

Authors:  V Sughanya; N Sureshbabu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-14

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.