Literature DB >> 24764922

5-Amino-1H-pyrazol-2-ium hydrogen succinate.

Thammarse S Yamuna1, Manpreet Kaur1, Brian J Anderson2, Jerry P Jasinski2, H S Yathirajan1.   

Abstract

In the cation of the title salt, C3H6N3 (+)·C4H5O4 (-), the protonated pyrazolium ring is planar (r.m.s. deviation = 0.012 Å). An intra-molecular C-H⋯O hydrogen bond occurs in the anion. In the crystal, N-H⋯O hydrogen bonds and a weak C-H⋯O inter-action between the cations and anions form two sets of R 2 (2)(8) graph-set ring motifs. Inter-molecular O-H⋯O hydrogen bonds between these lead to a criss-cross pattern along the b axis. In addition to the classical hydrogen bonds, a weak C-H⋯π(pyrazolium) inter-action is observed and contributes to crystal packing. All of these inter-actions link the mol-ecules into a two-dimensional supra-molecular framework parallel to (10-1).

Entities:  

Year:  2014        PMID: 24764922      PMCID: PMC3998361          DOI: 10.1107/S1600536814001615

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the broad spectrum of biological properties of pyrazoles, see: Hall et al. (2009 ▶) and for their biological and medicinal activities, see: Vinogradov et al. (1994 ▶). For succinic acid derivatives used in chemicals, food and pharmaceuticals, see: Sauer et al. (2008 ▶). For related structures, see: Kavitha et al. (2013 ▶); Kettmann et al. (2005 ▶); Koziol et al. (2006 ▶); Parvez et al. (2001 ▶); Yamuna et al. (2013 ▶).

Experimental

Crystal data

C3H6N3 +·C4H5O4 M = 201.19 Monoclinic, a = 18.525 (3) Å b = 6.7872 (9) Å c = 14.564 (3) Å β = 108.900 (18)° V = 1732.4 (5) Å3 Z = 8 Mo Kα radiation μ = 0.13 mm−1 T = 173 K 0.32 × 0.24 × 0.12 mm

Data collection

Agilent Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.591, T max = 1.000 5745 measured reflections 2922 independent reflections 1925 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.212 S = 1.08 2922 reflections 136 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814001615/tk5290sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814001615/tk5290Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814001615/tk5290Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C3H6N3+·C4H5O4F(000) = 848
Mr = 201.19Dx = 1.543 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 18.525 (3) ÅCell parameters from 1155 reflections
b = 6.7872 (9) Åθ = 3.2–32.9°
c = 14.564 (3) ŵ = 0.13 mm1
β = 108.900 (18)°T = 173 K
V = 1732.4 (5) Å3Irregular, colorless
Z = 80.32 × 0.24 × 0.12 mm
Agilent Eos Gemini diffractometer2922 independent reflections
Radiation source: Enhance (Mo) X-ray Source1925 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.053
ω scansθmax = 33.0°, θmin = 3.2°
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)h = −11→27
Tmin = 0.591, Tmax = 1.000k = −9→9
5745 measured reflectionsl = −22→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.071H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.212w = 1/[σ2(Fo2) + (0.1004P)2] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2922 reflectionsΔρmax = 0.36 e Å3
136 parametersΔρmin = −0.40 e Å3
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O1B0.43675 (7)−0.1627 (2)0.31692 (11)0.0344 (4)
H1B0.3996−0.19910.27190.052*
O2B0.49764 (7)0.1136 (2)0.36893 (11)0.0333 (4)
O3B0.32006 (7)0.6651 (2)0.19603 (10)0.0272 (3)
O4B0.26029 (7)0.3890 (2)0.13537 (12)0.0363 (4)
C1B0.44071 (9)0.0315 (3)0.31702 (12)0.0229 (4)
C2B0.37281 (9)0.1414 (3)0.25149 (13)0.0218 (4)
H2BA0.32920.11730.27290.026*
H2BB0.36080.09040.18600.026*
C3B0.38592 (9)0.3623 (3)0.24999 (13)0.0230 (4)
H3BA0.40140.41120.31610.028*
H3BB0.42760.38610.22480.028*
C4B0.31721 (9)0.4781 (3)0.18995 (12)0.0228 (4)
N1A0.63879 (8)0.9224 (2)0.48607 (12)0.0309 (4)
H1AA0.67820.99400.51360.037*
H1AB0.59880.97450.44560.037*
N2A0.70115 (8)0.6414 (2)0.56897 (12)0.0253 (4)
H2A0.7424 (17)0.704 (4)0.617 (2)0.057 (8)*
N3A0.68467 (8)0.4473 (2)0.57546 (12)0.0266 (4)
H3A0.7227 (16)0.354 (4)0.603 (2)0.051 (8)*
C1A0.63984 (9)0.7296 (3)0.50616 (12)0.0230 (4)
C2A0.58387 (9)0.5854 (3)0.46966 (13)0.0258 (4)
H2AA0.53580.60310.42410.031*
C3A0.61415 (10)0.4134 (3)0.51456 (14)0.0272 (4)
H3AA0.58970.29180.50440.033*
U11U22U33U12U13U23
O1B0.0265 (7)0.0171 (7)0.0430 (8)0.0006 (5)−0.0117 (6)0.0017 (6)
O2B0.0216 (6)0.0230 (7)0.0404 (8)−0.0020 (5)−0.0107 (5)0.0005 (6)
O3B0.0237 (6)0.0148 (7)0.0323 (7)0.0010 (5)−0.0057 (5)−0.0003 (5)
O4B0.0230 (6)0.0186 (7)0.0476 (9)−0.0014 (5)−0.0157 (6)0.0001 (6)
C1B0.0182 (7)0.0179 (9)0.0261 (8)0.0013 (6)−0.0019 (6)0.0017 (6)
C2B0.0158 (7)0.0180 (9)0.0250 (8)0.0008 (6)−0.0021 (5)−0.0006 (6)
C3B0.0171 (7)0.0163 (9)0.0289 (9)−0.0003 (6)−0.0019 (6)0.0020 (6)
C4B0.0195 (7)0.0182 (9)0.0247 (8)0.0015 (6)−0.0012 (6)0.0018 (6)
N1A0.0221 (7)0.0196 (9)0.0387 (9)−0.0001 (6)−0.0073 (6)0.0024 (7)
N2A0.0186 (7)0.0175 (8)0.0306 (8)0.0012 (5)−0.0047 (5)0.0002 (6)
N3A0.0215 (7)0.0175 (8)0.0319 (8)0.0009 (6)−0.0037 (5)0.0007 (6)
C1A0.0188 (7)0.0194 (9)0.0245 (8)0.0032 (6)−0.0018 (5)−0.0012 (6)
C2A0.0176 (7)0.0218 (9)0.0300 (9)0.0007 (6)−0.0033 (6)−0.0021 (7)
C3A0.0227 (8)0.0206 (10)0.0313 (9)−0.0025 (6)−0.0011 (6)−0.0025 (7)
O1B—H1B0.8200N1A—H1AA0.8600
O1B—C1B1.320 (2)N1A—H1AB0.8600
O2B—C1B1.216 (2)N1A—C1A1.339 (2)
O3B—C4B1.272 (2)N2A—H2A0.95 (3)
O4B—C4B1.252 (2)N2A—N3A1.362 (2)
C1B—C2B1.507 (2)N2A—C1A1.346 (2)
C2B—H2BA0.9700N3A—H3A0.94 (3)
C2B—H2BB0.9700N3A—C3A1.340 (2)
C2B—C3B1.520 (2)C1A—C2A1.399 (2)
C3B—H3BA0.9700C2A—H2AA0.9300
C3B—H3BB0.9700C2A—C3A1.367 (3)
C3B—C4B1.510 (2)C3A—H3AA0.9300
C1B—O1B—H1B109.5H1AA—N1A—H1AB120.0
O1B—C1B—C2B117.32 (14)C1A—N1A—H1AA120.0
O2B—C1B—O1B119.68 (15)C1A—N1A—H1AB120.0
O2B—C1B—C2B123.00 (17)N3A—N2A—H2A121.7 (17)
C1B—C2B—H2BA109.0C1A—N2A—H2A126.8 (17)
C1B—C2B—H2BB109.0C1A—N2A—N3A108.58 (14)
C1B—C2B—C3B113.14 (14)N2A—N3A—H3A122.1 (17)
H2BA—C2B—H2BB107.8C3A—N3A—N2A108.22 (15)
C3B—C2B—H2BA109.0C3A—N3A—H3A127.1 (17)
C3B—C2B—H2BB109.0N1A—C1A—N2A122.17 (15)
C2B—C3B—H3BA108.7N1A—C1A—C2A130.06 (15)
C2B—C3B—H3BB108.7N2A—C1A—C2A107.76 (16)
H3BA—C3B—H3BB107.6C1A—C2A—H2AA127.0
C4B—C3B—C2B114.39 (14)C3A—C2A—C1A106.08 (15)
C4B—C3B—H3BA108.7C3A—C2A—H2AA127.0
C4B—C3B—H3BB108.7N3A—C3A—C2A109.32 (17)
O3B—C4B—C3B118.07 (14)N3A—C3A—H3AA125.3
O4B—C4B—O3B122.26 (15)C2A—C3A—H3AA125.3
O4B—C4B—C3B119.66 (16)
O1B—C1B—C2B—C3B−174.71 (17)N2A—N3A—C3A—C2A−1.2 (2)
O2B—C1B—C2B—C3B5.4 (3)N2A—C1A—C2A—C3A1.1 (2)
C1B—C2B—C3B—C4B−176.32 (15)N3A—N2A—C1A—N1A178.99 (17)
C2B—C3B—C4B—O3B170.20 (17)N3A—N2A—C1A—C2A−1.9 (2)
C2B—C3B—C4B—O4B−10.8 (3)C1A—N2A—N3A—C3A1.9 (2)
N1A—C1A—C2A—C3A−179.8 (2)C1A—C2A—C3A—N3A0.0 (2)
D—H···AD—HH···AD···AD—H···A
O1B—H1B···O3Bi0.821.792.5832 (18)164
N1A—H1AA···O4Bii0.862.082.874 (2)153
N1A—H1AB···O2Biii0.862.072.923 (2)170
N2A—H2A···O3Bii0.95 (3)1.76 (3)2.7132 (19)174 (3)
N3A—H3A···O4Biv0.94 (3)1.79 (3)2.672 (2)156 (3)
C2A—H2AA···O1Biii0.932.543.372 (2)148
C3A—H3AA···O2B0.932.473.214 (2)138
C3B—H3BA···Cg1v0.972.693.511 (2)142
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the pyrazolium ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1B—H1B⋯O3B i 0.821.792.5832 (18)164
N1A—H1AA⋯O4B ii 0.862.082.874 (2)153
N1A—H1AB⋯O2B iii 0.862.072.923 (2)170
N2A—H2A⋯O3B ii 0.95 (3)1.76 (3)2.7132 (19)174 (3)
N3A—H3A⋯O4B iv 0.94 (3)1.79 (3)2.672 (2)156 (3)
C2A—H2AA⋯O1B iii 0.932.543.372 (2)148
C3A—H3AA⋯O2B 0.932.473.214 (2)138
C3B—H3BACg1v 0.972.693.511 (2)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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