Literature DB >> 24764915

1-Piperonylpiperazinium picrate.

Channappa N Kavitha1, Manpreet Kaur1, Brian J Anderson2, Jerry P Jasinski2, H S Yathirajan1.   

Abstract

IN THE CATION OF THE TITLE SALT [SYSTEMATIC NAME: 4-(2H-1,3-benzodioxol-5-ylmeth-yl)piperazin-1-ium 2,4,6-tri-nitro-phen-o-late], C12H17N2O2 (+)·C6H2N3O7 (-), the piperazine ring adopts a slightly disordered chair conformation. The piperonyl ring system and the piperazine ring are twisted with respect to each other with an N-C-C-C torsion angle of 40.7 (2)°. In the anion, the dihedral angles between the mean planes of the nitro substituents ortho to the phenolate O atom and the mean plane of the phenyl ring are 28.8 (9) and 32.2 (8)°. In contrast, the nitro group in the para position lies much closer to the aromatic ring plane, subtending a dihedral angle of 3.0 (1)°. In the crystal, the cations and anions inter-act through N-H⋯O hydrogen bonds and a weak C-H⋯O inter-action. Weak C-H⋯O inter-actions are also observed between the anions, forming R 2 (2)(10) graph-set ring motifs. In addition, a weak centroid-centroid π-π stacking inter-action between the aromatic rings of the cation and the anion, with an inter-centroid distance of 3.7471 (9) Å, contributes to the crystal packing, resulting in a two-dimensional network along (10-1).

Entities:  

Year:  2014        PMID: 24764915      PMCID: PMC3998354          DOI: 10.1107/S1600536814001524

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmaceutical applications of the title cation, see: Millan et al. (2001 ▶) and for the pharmacological and toxicological uses of piperazine derivatives, see: Brockunier et al. (2004 ▶); Bogatcheva et al. (2006 ▶); Choudhary et al. (2006 ▶); Elliott (2011 ▶); Kharb et al. (2012 ▶). For a related structure, see: Capuano et al. (2000 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶) and for standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C12H17N2O2 +·C6H2N3O7 − M = 449.38 Monoclinic, a = 12.0864 (2) Å b = 6.96981 (11) Å c = 23.4898 (4) Å β = 96.5141 (17)° V = 1965.99 (6) Å3 Z = 4 Cu Kα radiation μ = 1.06 mm−1 T = 173 K 0.48 × 0.24 × 0.22 mm

Data collection

Agilent Gemini EOS diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.761, T max = 1.000 12154 measured reflections 3837 independent reflections 3316 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.121 S = 1.05 3837 reflections 298 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814001524/sj5385sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814001524/sj5385Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814001524/sj5385Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H17N2O2+·C6H2N3O7F(000) = 936
Mr = 449.38Dx = 1.518 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.5418 Å
a = 12.0864 (2) ÅCell parameters from 4971 reflections
b = 6.96981 (11) Åθ = 3.7–72.4°
c = 23.4898 (4) ŵ = 1.06 mm1
β = 96.5141 (17)°T = 173 K
V = 1965.99 (6) Å3Irregular, dark yellow
Z = 40.48 × 0.24 × 0.22 mm
Agilent Gemini EOS diffractometer3837 independent reflections
Radiation source: Enhance (Cu) X-ray Source3316 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.033
ω scansθmax = 72.5°, θmin = 3.8°
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)h = −13→14
Tmin = 0.761, Tmax = 1.000k = −6→8
12154 measured reflectionsl = −28→28
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.043w = 1/[σ2(Fo2) + (0.0679P)2 + 0.5476P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.121(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.29 e Å3
3837 reflectionsΔρmin = −0.21 e Å3
298 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0016 (2)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O1B0.84597 (9)0.58513 (17)0.47124 (5)0.0352 (3)
O2B0.77598 (13)0.8599 (2)0.53866 (6)0.0578 (4)
O3B0.64101 (13)1.01645 (19)0.49224 (7)0.0570 (4)
O4B0.32910 (10)0.61289 (19)0.42367 (6)0.0463 (3)
O5B0.35919 (10)0.34651 (18)0.38117 (6)0.0461 (3)
O6B0.73947 (12)0.1561 (2)0.36561 (7)0.0598 (4)
O7B0.85686 (11)0.2174 (2)0.43946 (7)0.0571 (4)
N1B0.69547 (12)0.8710 (2)0.50202 (6)0.0372 (3)
N2B0.39201 (11)0.4894 (2)0.40823 (6)0.0331 (3)
N3B0.76868 (11)0.2469 (2)0.40934 (6)0.0372 (3)
C1B0.74326 (12)0.5605 (2)0.45716 (6)0.0274 (3)
C2B0.66022 (13)0.6984 (2)0.46929 (6)0.0285 (3)
C3B0.54835 (13)0.6790 (2)0.45310 (6)0.0286 (3)
H3B0.49750.77550.46210.034*
C4B0.51081 (12)0.5151 (2)0.42331 (6)0.0277 (3)
C5B0.58320 (13)0.3750 (2)0.40867 (6)0.0283 (3)
H5B0.55630.26510.38750.034*
C6B0.69516 (12)0.3982 (2)0.42543 (6)0.0288 (3)
O1A0.46181 (10)0.97115 (18)0.33755 (6)0.0418 (3)
O2A0.31610 (10)0.78306 (19)0.29640 (6)0.0478 (3)
N1A0.49795 (10)0.22233 (18)0.18479 (5)0.0281 (3)
N2A0.45154 (12)0.0793 (2)0.07075 (6)0.0403 (4)
C1A0.57171 (13)0.2789 (2)0.23569 (7)0.0335 (4)
H1AA0.64930.28160.22600.040*
H1AB0.56760.18050.26580.040*
C2A0.54431 (13)0.4722 (2)0.25959 (6)0.0293 (3)
C3A0.63089 (12)0.5898 (2)0.28273 (7)0.0314 (3)
H3A0.70540.55140.27980.038*
C4A0.61191 (13)0.7628 (2)0.31028 (7)0.0320 (3)
H4A0.67140.84180.32650.038*
C5A0.50268 (13)0.8118 (2)0.31260 (6)0.0303 (3)
C6A0.34372 (15)0.9629 (3)0.32388 (9)0.0469 (5)
H6AA0.31811.07010.29800.056*
H6AB0.30680.97410.35920.056*
C7A0.41608 (13)0.6991 (2)0.28819 (7)0.0320 (3)
C8A0.43308 (13)0.5274 (2)0.26208 (7)0.0316 (3)
H8A0.37270.44950.24640.038*
C9A0.51724 (14)0.0216 (2)0.17120 (7)0.0342 (4)
H9AA0.5076−0.05910.20500.041*
H9AB0.59470.00560.16210.041*
C10A0.43710 (14)−0.0439 (3)0.12078 (8)0.0403 (4)
H10A0.4521−0.17940.11170.048*
H10B0.3596−0.03430.13030.048*
C11A0.43605 (16)0.2859 (3)0.08385 (8)0.0441 (4)
H11A0.35840.30890.09170.053*
H11B0.45050.36530.05050.053*
C12A0.51592 (14)0.3411 (2)0.13567 (7)0.0356 (4)
H12A0.59350.32510.12680.043*
H12B0.50490.47770.14510.043*
H2AA0.522 (2)0.062 (3)0.0623 (9)0.053 (6)*
H2AB0.403 (2)0.044 (3)0.0403 (10)0.056 (6)*
U11U22U33U12U13U23
O1B0.0238 (6)0.0469 (7)0.0338 (6)−0.0022 (5)−0.0014 (4)0.0020 (5)
O2B0.0567 (9)0.0563 (9)0.0564 (9)−0.0110 (7)−0.0116 (7)−0.0159 (7)
O3B0.0560 (9)0.0345 (7)0.0808 (11)0.0035 (6)0.0096 (7)−0.0108 (7)
O4B0.0263 (6)0.0505 (8)0.0615 (8)0.0095 (5)0.0023 (5)−0.0064 (6)
O5B0.0281 (6)0.0474 (7)0.0620 (8)−0.0078 (5)0.0014 (5)−0.0133 (6)
O6B0.0429 (8)0.0581 (9)0.0773 (10)0.0081 (6)0.0021 (7)−0.0352 (8)
O7B0.0349 (7)0.0571 (9)0.0762 (10)0.0191 (6)−0.0069 (7)−0.0085 (7)
N1B0.0373 (8)0.0353 (8)0.0397 (8)−0.0064 (6)0.0069 (6)−0.0046 (6)
N2B0.0244 (7)0.0388 (7)0.0360 (7)0.0011 (5)0.0027 (5)0.0025 (6)
N3B0.0278 (7)0.0346 (7)0.0495 (9)0.0025 (6)0.0055 (6)−0.0040 (6)
C1B0.0243 (7)0.0346 (8)0.0227 (7)0.0000 (6)0.0007 (5)0.0048 (6)
C2B0.0294 (8)0.0300 (8)0.0257 (7)−0.0016 (6)0.0021 (6)0.0011 (6)
C3B0.0276 (8)0.0313 (7)0.0273 (7)0.0038 (6)0.0051 (6)0.0033 (6)
C4B0.0228 (7)0.0342 (8)0.0259 (7)0.0007 (6)0.0015 (6)0.0033 (6)
C5B0.0275 (8)0.0303 (7)0.0269 (7)−0.0010 (6)0.0023 (6)−0.0003 (6)
C6B0.0258 (8)0.0304 (8)0.0304 (7)0.0036 (6)0.0035 (6)0.0015 (6)
O1A0.0320 (6)0.0398 (7)0.0528 (8)0.0017 (5)0.0007 (5)−0.0153 (5)
O2A0.0259 (6)0.0481 (7)0.0684 (9)0.0020 (5)0.0013 (6)−0.0207 (6)
N1A0.0256 (6)0.0306 (6)0.0271 (6)−0.0010 (5)−0.0008 (5)−0.0014 (5)
N2A0.0240 (7)0.0642 (10)0.0313 (7)0.0038 (6)−0.0036 (6)−0.0126 (7)
C1A0.0297 (8)0.0351 (8)0.0336 (8)0.0028 (6)−0.0054 (6)−0.0029 (6)
C2A0.0270 (8)0.0328 (8)0.0269 (7)−0.0014 (6)−0.0015 (6)0.0004 (6)
C3A0.0222 (7)0.0366 (8)0.0350 (8)−0.0011 (6)0.0006 (6)0.0003 (6)
C4A0.0251 (8)0.0361 (8)0.0334 (8)−0.0062 (6)−0.0019 (6)−0.0013 (6)
C5A0.0323 (8)0.0306 (8)0.0277 (7)−0.0021 (6)0.0015 (6)−0.0017 (6)
C6A0.0312 (9)0.0449 (10)0.0639 (12)0.0027 (7)0.0025 (8)−0.0148 (9)
C7A0.0228 (7)0.0391 (8)0.0335 (8)−0.0006 (6)0.0004 (6)−0.0003 (6)
C8A0.0244 (7)0.0355 (8)0.0333 (8)−0.0043 (6)−0.0032 (6)−0.0040 (6)
C9A0.0347 (8)0.0313 (8)0.0353 (8)0.0012 (6)−0.0018 (7)−0.0021 (6)
C10A0.0316 (9)0.0432 (9)0.0451 (10)−0.0040 (7)−0.0001 (7)−0.0112 (8)
C11A0.0422 (10)0.0556 (11)0.0332 (9)0.0114 (8)−0.0009 (7)0.0044 (8)
C12A0.0379 (9)0.0355 (8)0.0330 (8)0.0006 (7)0.0029 (7)0.0023 (6)
O1B—C1B1.2597 (18)N2A—H2AA0.91 (2)
O2B—N1B1.226 (2)N2A—H2AB0.91 (2)
O3B—N1B1.216 (2)C1A—H1AA0.9900
O4B—N2B1.2298 (18)C1A—H1AB0.9900
O5B—N2B1.2234 (18)C1A—C2A1.511 (2)
O6B—N3B1.2240 (19)C2A—C3A1.390 (2)
O7B—N3B1.2278 (18)C2A—C8A1.406 (2)
N1B—C2B1.465 (2)C3A—H3A0.9500
N2B—C4B1.4505 (19)C3A—C4A1.400 (2)
N3B—C6B1.456 (2)C4A—H4A0.9500
C1B—C2B1.441 (2)C4A—C5A1.371 (2)
C1B—C6B1.441 (2)C5A—C7A1.380 (2)
C2B—C3B1.369 (2)C6A—H6AA0.9900
C3B—H3B0.9500C6A—H6AB0.9900
C3B—C4B1.388 (2)C7A—C8A1.371 (2)
C4B—C5B1.381 (2)C8A—H8A0.9500
C5B—H5B0.9500C9A—H9AA0.9900
C5B—C6B1.375 (2)C9A—H9AB0.9900
O1A—C5A1.3735 (19)C9A—C10A1.513 (2)
O1A—C6A1.428 (2)C10A—H10A0.9900
O2A—C6A1.432 (2)C10A—H10B0.9900
O2A—C7A1.3757 (19)C11A—H11A0.9900
N1A—C1A1.4621 (19)C11A—H11B0.9900
N1A—C9A1.460 (2)C11A—C12A1.515 (2)
N1A—C12A1.456 (2)C12A—H12A0.9900
N2A—C10A1.481 (2)C12A—H12B0.9900
N2A—C11A1.489 (2)
O2B—N1B—C2B118.49 (14)C8A—C2A—C1A120.69 (14)
O3B—N1B—O2B123.68 (15)C2A—C3A—H3A118.9
O3B—N1B—C2B117.80 (14)C2A—C3A—C4A122.20 (14)
O4B—N2B—C4B118.01 (14)C4A—C3A—H3A118.9
O5B—N2B—O4B123.24 (14)C3A—C4A—H4A121.9
O5B—N2B—C4B118.76 (13)C5A—C4A—C3A116.24 (14)
O6B—N3B—O7B123.10 (15)C5A—C4A—H4A121.9
O6B—N3B—C6B117.76 (14)O1A—C5A—C7A110.17 (14)
O7B—N3B—C6B119.13 (14)C4A—C5A—O1A127.81 (14)
O1B—C1B—C2B123.00 (14)C4A—C5A—C7A122.01 (15)
O1B—C1B—C6B124.81 (14)O1A—C6A—O2A108.21 (13)
C6B—C1B—C2B112.14 (13)O1A—C6A—H6AA110.1
C1B—C2B—N1B118.95 (13)O1A—C6A—H6AB110.1
C3B—C2B—N1B116.50 (13)O2A—C6A—H6AA110.1
C3B—C2B—C1B124.54 (14)O2A—C6A—H6AB110.1
C2B—C3B—H3B120.7H6AA—C6A—H6AB108.4
C2B—C3B—C4B118.51 (14)O2A—C7A—C5A109.66 (14)
C4B—C3B—H3B120.7C8A—C7A—O2A127.79 (14)
C3B—C4B—N2B118.85 (13)C8A—C7A—C5A122.51 (15)
C5B—C4B—N2B119.31 (14)C2A—C8A—H8A121.6
C5B—C4B—C3B121.83 (14)C7A—C8A—C2A116.75 (14)
C4B—C5B—H5B120.8C7A—C8A—H8A121.6
C6B—C5B—C4B118.45 (14)N1A—C9A—H9AA109.5
C6B—C5B—H5B120.8N1A—C9A—H9AB109.5
C1B—C6B—N3B118.73 (13)N1A—C9A—C10A110.87 (13)
C5B—C6B—N3B116.76 (13)H9AA—C9A—H9AB108.1
C5B—C6B—C1B124.50 (14)C10A—C9A—H9AA109.5
C5A—O1A—C6A105.68 (12)C10A—C9A—H9AB109.5
C7A—O2A—C6A105.78 (12)N2A—C10A—C9A108.90 (14)
C9A—N1A—C1A109.85 (12)N2A—C10A—H10A109.9
C12A—N1A—C1A111.28 (13)N2A—C10A—H10B109.9
C12A—N1A—C9A109.25 (12)C9A—C10A—H10A109.9
C10A—N2A—C11A111.56 (14)C9A—C10A—H10B109.9
C10A—N2A—H2AA107.4 (14)H10A—C10A—H10B108.3
C10A—N2A—H2AB110.1 (15)N2A—C11A—H11A109.9
C11A—N2A—H2AA108.3 (14)N2A—C11A—H11B109.9
C11A—N2A—H2AB109.7 (15)N2A—C11A—C12A109.15 (14)
H2AA—N2A—H2AB110 (2)H11A—C11A—H11B108.3
N1A—C1A—H1AA108.8C12A—C11A—H11A109.9
N1A—C1A—H1AB108.8C12A—C11A—H11B109.9
N1A—C1A—C2A113.90 (13)N1A—C12A—C11A110.72 (14)
H1AA—C1A—H1AB107.7N1A—C12A—H12A109.5
C2A—C1A—H1AA108.8N1A—C12A—H12B109.5
C2A—C1A—H1AB108.8C11A—C12A—H12A109.5
C3A—C2A—C1A118.94 (14)C11A—C12A—H12B109.5
C3A—C2A—C8A120.22 (15)H12A—C12A—H12B108.1
O1B—C1B—C2B—N1B−3.2 (2)O2A—C7A—C8A—C2A−179.39 (16)
O1B—C1B—C2B—C3B177.92 (14)N1A—C1A—C2A—C3A−143.67 (15)
O1B—C1B—C6B—N3B1.8 (2)N1A—C1A—C2A—C8A40.7 (2)
O1B—C1B—C6B—C5B−177.91 (14)N1A—C9A—C10A—N2A58.56 (18)
O2B—N1B—C2B—C1B−32.4 (2)N2A—C11A—C12A—N1A−57.98 (19)
O2B—N1B—C2B—C3B146.50 (16)C1A—N1A—C9A—C10A176.60 (14)
O3B—N1B—C2B—C1B149.48 (15)C1A—N1A—C12A—C11A−177.88 (14)
O3B—N1B—C2B—C3B−31.6 (2)C1A—C2A—C3A—C4A−174.11 (15)
O4B—N2B—C4B—C3B−1.5 (2)C1A—C2A—C8A—C7A175.38 (14)
O4B—N2B—C4B—C5B177.30 (14)C2A—C3A—C4A—C5A−0.8 (2)
O5B—N2B—C4B—C3B178.82 (14)C3A—C2A—C8A—C7A−0.2 (2)
O5B—N2B—C4B—C5B−2.4 (2)C3A—C4A—C5A—O1A179.11 (15)
O6B—N3B—C6B—C1B−150.82 (16)C3A—C4A—C5A—C7A−1.2 (2)
O6B—N3B—C6B—C5B28.9 (2)C4A—C5A—C7A—O2A−179.39 (15)
O7B—N3B—C6B—C1B28.4 (2)C4A—C5A—C7A—C8A2.7 (3)
O7B—N3B—C6B—C5B−151.86 (16)C5A—O1A—C6A—O2A7.0 (2)
N1B—C2B—C3B—C4B−178.32 (13)C5A—C7A—C8A—C2A−1.8 (2)
N2B—C4B—C5B—C6B−177.33 (13)C6A—O1A—C5A—C4A175.15 (17)
C1B—C2B—C3B—C4B0.6 (2)C6A—O1A—C5A—C7A−4.53 (19)
C2B—C1B—C6B—N3B179.38 (13)C6A—O2A—C7A—C5A4.0 (2)
C2B—C1B—C6B—C5B−0.4 (2)C6A—O2A—C7A—C8A−178.15 (17)
C2B—C3B—C4B—N2B177.29 (13)C7A—O2A—C6A—O1A−6.8 (2)
C2B—C3B—C4B—C5B−1.5 (2)C8A—C2A—C3A—C4A1.6 (2)
C3B—C4B—C5B—C6B1.4 (2)C9A—N1A—C1A—C2A−169.57 (13)
C4B—C5B—C6B—N3B179.77 (13)C9A—N1A—C12A—C11A60.66 (17)
C4B—C5B—C6B—C1B−0.5 (2)C10A—N2A—C11A—C12A56.16 (19)
C6B—C1B—C2B—N1B179.19 (13)C11A—N2A—C10A—C9A−56.31 (18)
C6B—C1B—C2B—C3B0.3 (2)C12A—N1A—C1A—C2A69.32 (17)
O1A—C5A—C7A—O2A0.31 (19)C12A—N1A—C9A—C10A−61.07 (17)
O1A—C5A—C7A—C8A−177.63 (15)
D—H···AD—HH···AD···AD—H···A
N2A—H2AA···O1Bi0.91 (2)1.86 (3)2.7409 (19)163 (2)
N2A—H2AB···O1Bii0.91 (2)1.91 (2)2.7798 (18)159 (2)
C4A—H4A···O6Biii0.952.483.335 (2)150
C3B—H3B···O3Biv0.952.543.473 (2)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2A—H2AA⋯O1B i 0.91 (2)1.86 (3)2.7409 (19)163 (2)
N2A—H2AB⋯O1B ii 0.91 (2)1.91 (2)2.7798 (18)159 (2)
C4A—H4A⋯O6B iii 0.952.483.335 (2)150
C3B—H3B⋯O3B iv 0.952.543.473 (2)166

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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