Literature DB >> 24764886

(S,Z)-3-Phenyl-2-[(1,1,1-tri-chloro-7-meth-oxy-2,7-dioxohept-3-en-4-yl)amino]-propanoic acid monohydrate.

Alex Fabiani Claro Flores1, Juliano Rosa de Menezes Vicenti1, Lucas Pizzuti2, Patrick Teixeira Campos3.   

Abstract

In the title compound, C17H18Cl3NO5·H2O, intra-molecular N-H⋯O and C-H⋯Cl hydrogen bonds form S(6) and S(5) ring motifs, respectively. The chiral organic mol-ecule is connected to the solvent water mol-ecule by a short O-H⋯O hydrogen bond. In the crystal, a weak C-H⋯Cl inter-action connects the organic mol-ecules along [100] while the water mol-ecules act as bridges between the organic mol-ecules in both the [100] and [010] directions, generating layers parallel to the ab plane.

Entities:  

Year:  2014        PMID: 24764886      PMCID: PMC3998325          DOI: 10.1107/S1600536814000154

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound and a similar crystal structure, see: Flores et al. (2008 ▶). For information about levulinic acid and the biological properties of its derivatives, see: Flores et al. (2013 ▶); Hachuła et al. (2013 ▶); Lo & Ng (2008 ▶). For short inter­molecular hydrogen-bond inter­actions, see: Pojarová et al. (2010 ▶). For intra­molecular hydrogen-bonding systems, see: da Costa et al. (2013 ▶).

Experimental

Crystal data

C17H18Cl3NO5·H2O M = 440.69 Triclinic, a = 5.6684 (16) Å b = 8.601 (3) Å c = 10.336 (3) Å α = 87.720 (19)° β = 85.696 (17)° γ = 85.649 (17)° V = 500.8 (2) Å3 Z = 1 Mo Kα radiation μ = 0.49 mm−1 T = 296 K 0.98 × 0.30 × 0.12 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: Gaussian (XPREP; Bruker, 2006 ▶) T min = 0.881, T max = 1 13424 measured reflections 6020 independent reflections 4784 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.105 S = 1.04 6020 reflections 256 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack parameter determined using 1984 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▶) Absolute structure parameter: 0.04 (2) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814000154/pk2509sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814000154/pk2509Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814000154/pk2509Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H18Cl3NO5·H2OF(000) = 228
Mr = 440.69Dx = 1.461 Mg m3
Triclinic, P1Melting point: 393 K
a = 5.6684 (16) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.601 (3) ÅCell parameters from 3866 reflections
c = 10.336 (3) Åθ = 3.0–25.5°
α = 87.720 (19)°µ = 0.49 mm1
β = 85.696 (17)°T = 296 K
γ = 85.649 (17)°Blade, colorless
V = 500.8 (2) Å30.98 × 0.30 × 0.12 mm
Z = 1
Bruker APEXII CCD diffractometer6020 independent reflections
Radiation source: fine-focus sealed tube4784 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 30.7°, θmin = 2.4°
Absorption correction: gaussian (XPREP; Bruker, 2006)h = −8→8
Tmin = 0.881, Tmax = 1k = −12→12
13424 measured reflectionsl = −14→14
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.040w = 1/[σ2(Fo2) + (0.0502P)2 + 0.0376P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.105(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.41 e Å3
6020 reflectionsΔρmin = −0.32 e Å3
256 parametersAbsolute structure: Flack parameter determined using 1984 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
3 restraintsAbsolute structure parameter: 0.04 (2)
Experimental. Absorption correction: XPREP (Bruker, 2006) was used to perform the Gaussian absorption correction based on the face-indexed crystal size.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O330.4813 (5)1.0147 (3)0.9230 (3)0.0554 (6)
H33B0.629 (11)0.977 (6)0.919 (5)0.083*
H410.147 (9)0.465 (6)0.794 (5)0.083*
H33A0.458 (10)1.092 (7)0.887 (5)0.083*
H920.352 (9)0.869 (6)0.864 (5)0.083*
Cl10.75049 (16)0.24572 (10)0.42096 (9)0.0652 (3)
Cl20.50084 (18)0.01516 (11)0.57338 (11)0.0759 (3)
Cl30.88358 (15)0.16349 (14)0.67617 (11)0.0742 (3)
N410.1053 (4)0.5403 (3)0.7462 (2)0.0403 (5)
C10.6395 (5)0.1924 (3)0.5785 (3)0.0432 (6)
C7−0.1436 (5)0.7761 (4)0.3642 (3)0.0424 (6)
C90.0625 (5)0.7901 (3)0.8625 (3)0.0439 (6)
C30.3699 (5)0.4434 (3)0.5739 (3)0.0412 (6)
H30.42820.45690.48800.049*
C10−0.0576 (5)0.6530 (3)0.8145 (3)0.0402 (6)
H10−0.17040.69560.75260.048*
C50.1234 (5)0.6912 (3)0.5398 (3)0.0414 (6)
H5A0.25260.71350.47640.050*
H5B0.08540.78280.59130.050*
C111−0.0514 (5)0.4758 (4)1.0193 (3)0.0455 (6)
C20.4540 (5)0.3128 (3)0.6460 (3)0.0386 (5)
C6−0.0917 (6)0.6567 (4)0.4700 (3)0.0472 (7)
H6A−0.06450.55450.43280.057*
H6B−0.22850.65430.53210.057*
C11−0.2023 (5)0.5712 (4)0.9264 (3)0.0475 (7)
H11A−0.30050.64960.97450.057*
H11B−0.30710.50330.88970.057*
C1120.0981 (7)0.5453 (4)1.0959 (3)0.0584 (8)
H1120.10400.65321.09160.070*
C8−0.4279 (7)0.8699 (5)0.2188 (4)0.0649 (10)
H8A−0.58330.85010.19530.097*
H8B−0.31650.85730.14460.097*
H8C−0.42990.97450.24810.097*
C116−0.0616 (8)0.3156 (4)1.0306 (4)0.0638 (9)
H116−0.16270.26640.98130.077*
C1150.0793 (10)0.2279 (5)1.1156 (4)0.0792 (13)
H1150.07180.12021.12220.095*
C1130.2391 (9)0.4563 (6)1.1789 (4)0.0734 (11)
H1130.34220.50391.22800.088*
C1140.2259 (9)0.2964 (6)1.1884 (4)0.0774 (13)
H1140.31830.23631.24500.093*
O72−0.3587 (4)0.7608 (3)0.3218 (2)0.0535 (5)
O920.2915 (4)0.7852 (3)0.8366 (3)0.0554 (5)
O91−0.0517 (4)0.8944 (3)0.9190 (3)0.0591 (6)
O71−0.0124 (5)0.8698 (3)0.3220 (3)0.0637 (7)
C40.2004 (5)0.5547 (3)0.6269 (3)0.0370 (5)
O210.3934 (4)0.2806 (2)0.7613 (2)0.0473 (5)
U11U22U33U12U13U23
O330.0494 (13)0.0492 (13)0.0673 (15)−0.0017 (11)−0.0076 (11)0.0051 (11)
Cl10.0759 (6)0.0560 (5)0.0586 (5)0.0031 (4)0.0241 (4)−0.0061 (4)
Cl20.0741 (6)0.0476 (4)0.1050 (8)−0.0204 (4)0.0308 (5)−0.0288 (5)
Cl30.0413 (4)0.0946 (7)0.0838 (6)0.0154 (4)−0.0058 (4)−0.0032 (5)
N410.0439 (13)0.0350 (11)0.0398 (12)0.0079 (10)−0.0005 (9)0.0012 (9)
C10.0375 (14)0.0379 (14)0.0531 (16)−0.0024 (11)0.0056 (11)−0.0056 (11)
C70.0410 (14)0.0435 (15)0.0412 (14)0.0029 (12)−0.0024 (11)0.0028 (11)
C90.0441 (14)0.0397 (14)0.0459 (15)0.0077 (11)−0.0048 (11)0.0056 (12)
C30.0417 (14)0.0403 (14)0.0398 (13)0.0013 (11)0.0024 (10)0.0017 (11)
C100.0375 (13)0.0376 (13)0.0444 (14)0.0073 (11)−0.0052 (11)−0.0035 (11)
C50.0419 (14)0.0338 (13)0.0481 (15)−0.0020 (10)−0.0039 (11)0.0043 (11)
C1110.0480 (15)0.0477 (16)0.0385 (13)0.0000 (13)0.0078 (12)−0.0018 (12)
C20.0349 (12)0.0363 (13)0.0440 (14)0.0022 (10)−0.0012 (10)−0.0049 (10)
C60.0478 (16)0.0414 (15)0.0532 (16)−0.0051 (12)−0.0114 (13)0.0081 (13)
C110.0387 (14)0.0508 (17)0.0516 (16)0.0032 (12)0.0001 (12)−0.0028 (13)
C1120.075 (2)0.0510 (19)0.0489 (17)−0.0038 (17)−0.0081 (16)0.0032 (14)
C80.063 (2)0.081 (3)0.0495 (18)0.0133 (19)−0.0149 (15)0.0064 (17)
C1160.082 (3)0.0495 (19)0.059 (2)−0.0072 (17)0.0021 (18)−0.0027 (15)
C1150.115 (4)0.049 (2)0.069 (3)0.007 (2)0.006 (3)0.0063 (18)
C1130.084 (3)0.085 (3)0.052 (2)−0.004 (2)−0.0171 (19)0.0069 (19)
C1140.093 (3)0.078 (3)0.055 (2)0.026 (2)−0.002 (2)0.013 (2)
O720.0482 (12)0.0614 (14)0.0511 (12)−0.0012 (10)−0.0121 (9)0.0063 (10)
O920.0449 (12)0.0501 (13)0.0709 (14)−0.0013 (10)−0.0017 (10)−0.0073 (11)
O910.0540 (13)0.0445 (12)0.0778 (16)0.0107 (10)−0.0050 (11)−0.0166 (11)
O710.0538 (14)0.0628 (15)0.0738 (16)−0.0076 (11)−0.0098 (12)0.0244 (12)
C40.0379 (12)0.0331 (13)0.0400 (13)−0.0025 (10)−0.0037 (10)0.0014 (10)
O210.0524 (12)0.0423 (11)0.0432 (11)0.0133 (9)0.0038 (8)0.0029 (9)
O33—H33B0.87 (6)C5—H5B0.9700
O33—H33A0.76 (6)C111—C1161.384 (5)
Cl1—C11.757 (3)C111—C1121.385 (5)
Cl2—C11.772 (3)C111—C111.510 (4)
Cl3—C11.770 (3)C2—O211.241 (4)
N41—C41.314 (4)C6—H6A0.9700
N41—C101.453 (3)C6—H6B0.9700
N41—H410.83 (5)C11—H11A0.9700
C1—C21.564 (4)C11—H11B0.9700
C7—O711.186 (4)C112—C1131.385 (5)
C7—O721.343 (4)C112—H1120.9300
C7—C61.500 (4)C8—O721.448 (4)
C9—O911.209 (4)C8—H8A0.9600
C9—O921.303 (4)C8—H8B0.9600
C9—C101.523 (4)C8—H8C0.9600
C3—C21.397 (4)C116—C1151.393 (6)
C3—C41.401 (4)C116—H1160.9300
C3—H30.9300C115—C1141.344 (7)
C10—C111.545 (4)C115—H1150.9300
C10—H100.9800C113—C1141.382 (7)
C5—C41.509 (4)C113—H1130.9300
C5—C61.517 (4)C114—H1140.9300
C5—H5A0.9700O92—H920.89 (5)
H33B—O33—H33A115 (6)C7—C6—H6A109.2
C4—N41—C10126.9 (2)C5—C6—H6A109.2
C4—N41—H41121 (4)C7—C6—H6B109.2
C10—N41—H41112 (4)C5—C6—H6B109.2
C2—C1—Cl1116.0 (2)H6A—C6—H6B107.9
C2—C1—Cl3107.9 (2)C111—C11—C10113.8 (2)
Cl1—C1—Cl3107.55 (16)C111—C11—H11A108.8
C2—C1—Cl2107.0 (2)C10—C11—H11A108.8
Cl1—C1—Cl2109.06 (17)C111—C11—H11B108.8
Cl3—C1—Cl2109.22 (17)C10—C11—H11B108.8
O71—C7—O72124.4 (3)H11A—C11—H11B107.7
O71—C7—C6125.1 (3)C111—C112—C113120.9 (4)
O72—C7—C6110.5 (2)C111—C112—H112119.6
O91—C9—O92124.1 (3)C113—C112—H112119.6
O91—C9—C10121.0 (3)O72—C8—H8A109.5
O92—C9—C10114.9 (3)O72—C8—H8B109.5
C2—C3—C4122.1 (3)H8A—C8—H8B109.5
C2—C3—H3119.0O72—C8—H8C109.5
C4—C3—H3119.0H8A—C8—H8C109.5
N41—C10—C9113.6 (2)H8B—C8—H8C109.5
N41—C10—C11110.4 (2)C111—C116—C115120.1 (4)
C9—C10—C11111.3 (2)C111—C116—H116119.9
N41—C10—H10107.1C115—C116—H116119.9
C9—C10—H10107.1C114—C115—C116121.0 (4)
C11—C10—H10107.1C114—C115—H115119.5
C4—C5—C6110.9 (2)C116—C115—H115119.5
C4—C5—H5A109.5C114—C113—C112119.7 (4)
C6—C5—H5A109.5C114—C113—H113120.1
C4—C5—H5B109.5C112—C113—H113120.1
C6—C5—H5B109.5C115—C114—C113119.9 (4)
H5A—C5—H5B108.0C115—C114—H114120.1
C116—C111—C112118.3 (3)C113—C114—H114120.1
C116—C111—C11120.3 (3)C7—O72—C8115.5 (3)
C112—C111—C11121.4 (3)C9—O92—H92111 (3)
O21—C2—C3125.9 (3)N41—C4—C3122.1 (2)
O21—C2—C1115.3 (2)N41—C4—C5120.6 (2)
C3—C2—C1118.7 (3)C3—C4—C5117.4 (2)
C7—C6—C5112.0 (2)
C4—N41—C10—C9−76.6 (4)N41—C10—C11—C11154.1 (3)
C4—N41—C10—C11157.5 (3)C9—C10—C11—C111−73.0 (3)
O91—C9—C10—N41178.7 (3)C116—C111—C112—C1131.9 (6)
O92—C9—C10—N41−0.6 (4)C11—C111—C112—C113−178.7 (4)
O91—C9—C10—C11−56.0 (3)C112—C111—C116—C115−1.1 (5)
O92—C9—C10—C11124.7 (3)C11—C111—C116—C115179.5 (4)
C4—C3—C2—O21−0.5 (5)C111—C116—C115—C1140.3 (7)
C4—C3—C2—C1178.8 (3)C111—C112—C113—C114−1.9 (7)
Cl1—C1—C2—O21−173.6 (2)C116—C115—C114—C113−0.3 (7)
Cl3—C1—C2—O21−53.0 (3)C112—C113—C114—C1151.0 (7)
Cl2—C1—C2—O2164.5 (3)O71—C7—O72—C8−0.8 (5)
Cl1—C1—C2—C37.0 (4)C6—C7—O72—C8−179.7 (3)
Cl3—C1—C2—C3127.7 (3)C10—N41—C4—C3175.1 (3)
Cl2—C1—C2—C3−114.9 (3)C10—N41—C4—C5−7.0 (4)
O71—C7—C6—C513.3 (5)C2—C3—C4—N41−2.2 (5)
O72—C7—C6—C5−167.8 (3)C2—C3—C4—C5179.8 (3)
C4—C5—C6—C7−168.9 (3)C6—C5—C4—N41−86.6 (3)
C116—C111—C11—C10−115.5 (3)C6—C5—C4—C391.4 (3)
C112—C111—C11—C1065.1 (4)
D—H···AD—HH···AD···AD—H···A
C6—H6A···Cl1i0.972.943.774 (3)145
O33—H33B···O91ii0.87 (6)1.89 (6)2.766 (4)177 (5)
N41—H41···O210.83 (5)2.05 (6)2.672 (3)131 (5)
O33—H33A···O21iii0.76 (6)2.06 (6)2.815 (3)171 (6)
O92—H92···O330.89 (5)1.66 (5)2.542 (4)175 (5)
C3—H3···Cl10.932.553.031 (3)112
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6A⋯Cl1i 0.972.943.774 (3)145
O33—H33B⋯O91ii 0.87 (6)1.89 (6)2.766 (4)177 (5)
N41—H41⋯O210.83 (5)2.05 (6)2.672 (3)131 (5)
O33—H33A⋯O21iii 0.76 (6)2.06 (6)2.815 (3)171 (6)
O92—H92⋯O330.89 (5)1.66 (5)2.542 (4)175 (5)
C3—H3⋯Cl10.932.553.031 (3)112

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Cyclo-pentyl-diphen-yl(4-thio-semi-carbazonopenta-noato-κO)tin(IV).

Authors:  Kong Mun Lo; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-26

3.  Hydro-nium perchlorate-dibenzo-18-crown-6 (1/1): monoclinic polymorph.

Authors:  Michaela Pojarová; Karla Fejfarová; Emanuel Makrlík
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27

4.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

5.  2,2'-Dihydroxy-N,N'-(ethane-1,2-di-yl)di-benzamide.

Authors:  Daniel Pereira da Costa; Sabrina Madruga Nobre; Bruna Gonçalves Lisboa; Juliano Rosa de Menezes Vicenti; Davi Fernando Back
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-09

6.  Levulinic Acid.

Authors:  Barbara Hachuła; Anna Polasz; Marzena Dzida; Maria Nowak; Joachim Kusz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-10
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.