| Literature DB >> 24427044 |
Barbara Hachuła1, Anna Polasz1, Marzena Dzida1, Maria Nowak2, Joachim Kusz2.
Abstract
THE TITLE COMPOUND (SYSTEMATIC NAME: 4-oxo-penta-noic acid), C5H8O3, is close to planar (r.m.s. deviation = 0.0762 Å). In the crystal, the mol-ecules inter-act via O-H⋯O hydrogen bonds in which the hy-droxy O atoms act as donors and the ketone O atoms in adjacent mol-ecules as acceptors, forming C(7) chains along [20-1].Entities:
Year: 2013 PMID: 24427044 PMCID: PMC3884454 DOI: 10.1107/S1600536813021090
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H8O3 | |
| Monoclinic, | Melting point = 303–306 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 6623 reflections | |
| θ = 3.4–34.5° | |
| µ = 0.11 mm−1 | |
| β = 99.112 (3)° | |
| Polyhedron, colourless | |
| 0.44 × 0.21 × 0.16 mm |
| Oxford Diffraction Xcalibur diffractometer with a Sapphire3 detector | 1013 independent reflections |
| Radiation source: fine-focus sealed tube | 902 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0328 pixels mm-1 | θmax = 25.1°, θmin = 3.4° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 7178 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1013 reflections | (Δ/σ)max < 0.001 |
| 77 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Experimental. CrysAlis RED (Oxford Diffraction, 2006). Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.4194 (2) | 0.16988 (8) | 1.05179 (10) | 0.0186 (3) | |
| O2 | 0.3930 (2) | 0.35384 (9) | 1.06449 (12) | 0.0286 (4) | |
| O3 | 1.0589 (2) | 0.31839 (8) | 0.73324 (10) | 0.0197 (3) | |
| C1 | 0.4836 (3) | 0.27238 (11) | 1.01688 (14) | 0.0159 (4) | |
| C2 | 0.6782 (3) | 0.27359 (12) | 0.91177 (14) | 0.0164 (4) | |
| H2A | 0.5932 | 0.2323 | 0.8288 | 0.020* | |
| H2B | 0.8537 | 0.2361 | 0.9505 | 0.020* | |
| C3 | 0.7411 (3) | 0.39098 (12) | 0.87113 (14) | 0.0170 (4) | |
| H3A | 0.5641 | 0.4276 | 0.8328 | 0.020* | |
| H3B | 0.8221 | 0.4319 | 0.9552 | 0.020* | |
| C4 | 0.9364 (3) | 0.39950 (11) | 0.76733 (13) | 0.0163 (4) | |
| C5 | 0.9722 (3) | 0.51213 (13) | 0.70857 (16) | 0.0242 (4) | |
| H5A | 1.1394 | 0.5130 | 0.6648 | 0.036* | |
| H5B | 0.9909 | 0.5671 | 0.7827 | 0.036* | |
| H5C | 0.8097 | 0.5299 | 0.6398 | 0.036* | |
| H1 | 0.311 (4) | 0.1766 (16) | 1.108 (2) | 0.036* |
| O1 | 0.0253 (6) | 0.0186 (6) | 0.0137 (5) | −0.0011 (4) | 0.0093 (4) | 0.0006 (4) |
| O2 | 0.0435 (7) | 0.0204 (6) | 0.0275 (7) | 0.0010 (5) | 0.0231 (5) | −0.0016 (5) |
| O3 | 0.0240 (6) | 0.0218 (6) | 0.0148 (5) | 0.0025 (4) | 0.0072 (4) | 0.0001 (4) |
| C1 | 0.0200 (7) | 0.0187 (7) | 0.0088 (7) | −0.0002 (6) | 0.0020 (5) | 0.0003 (5) |
| C2 | 0.0202 (7) | 0.0187 (8) | 0.0112 (7) | 0.0017 (5) | 0.0050 (5) | −0.0009 (5) |
| C3 | 0.0218 (7) | 0.0183 (8) | 0.0118 (7) | −0.0002 (5) | 0.0060 (6) | −0.0015 (5) |
| C4 | 0.0183 (7) | 0.0207 (8) | 0.0092 (7) | 0.0000 (5) | 0.0001 (5) | −0.0016 (6) |
| C5 | 0.0334 (8) | 0.0224 (8) | 0.0195 (8) | 0.0008 (6) | 0.0125 (6) | 0.0036 (6) |
| O1—C1 | 1.3373 (17) | C3—C4 | 1.5050 (19) |
| O1—H1 | 0.83 (2) | C3—H3A | 0.9900 |
| O2—C1 | 1.2044 (17) | C3—H3B | 0.9900 |
| O3—C4 | 1.2231 (17) | C4—C5 | 1.501 (2) |
| C1—C2 | 1.5092 (19) | C5—H5A | 0.9800 |
| C2—C3 | 1.520 (2) | C5—H5B | 0.9800 |
| C2—H2A | 0.9900 | C5—H5C | 0.9800 |
| C2—H2B | 0.9900 | ||
| C1—O1—H1 | 106.3 (14) | C4—C3—H3B | 108.6 |
| O2—C1—O1 | 123.01 (13) | C2—C3—H3B | 108.6 |
| O2—C1—C2 | 124.51 (13) | H3A—C3—H3B | 107.6 |
| O1—C1—C2 | 112.48 (12) | O3—C4—C5 | 122.14 (13) |
| C1—C2—C3 | 111.32 (12) | O3—C4—C3 | 121.30 (12) |
| C1—C2—H2A | 109.4 | C5—C4—C3 | 116.57 (12) |
| C3—C2—H2A | 109.4 | C4—C5—H5A | 109.5 |
| C1—C2—H2B | 109.4 | C4—C5—H5B | 109.5 |
| C3—C2—H2B | 109.4 | H5A—C5—H5B | 109.5 |
| H2A—C2—H2B | 108.0 | C4—C5—H5C | 109.5 |
| C4—C3—C2 | 114.68 (12) | H5A—C5—H5C | 109.5 |
| C4—C3—H3A | 108.6 | H5B—C5—H5C | 109.5 |
| C2—C3—H3A | 108.6 | ||
| O2—C1—C2—C3 | −1.2 (2) | C2—C3—C4—O3 | −8.66 (18) |
| O1—C1—C2—C3 | 178.42 (10) | C2—C3—C4—C5 | 171.36 (11) |
| C1—C2—C3—C4 | 179.46 (11) |
| H··· | ||||
| O1—H1···O3i | 0.83 (2) | 1.87 (2) | 2.6977 (13) | 176 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯O3i | 0.83 (2) | 1.87 (2) | 2.6977 (13) | 176 (2) |
Symmetry code: (i) .