Literature DB >> 24427044

Levulinic Acid.

Barbara Hachuła1, Anna Polasz1, Marzena Dzida1, Maria Nowak2, Joachim Kusz2.   

Abstract

THE TITLE COMPOUND (SYSTEMATIC NAME: 4-oxo-penta-noic acid), C5H8O3, is close to planar (r.m.s. deviation = 0.0762 Å). In the crystal, the mol-ecules inter-act via O-H⋯O hydrogen bonds in which the hy-droxy O atoms act as donors and the ketone O atoms in adjacent mol-ecules as acceptors, forming C(7) chains along [20-1].

Entities:  

Year:  2013        PMID: 24427044      PMCID: PMC3884454          DOI: 10.1107/S1600536813021090

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For uses of levulinic acid, see: Timokhin et al. (1999 ▶). For density functional and Møller–Plesset perturbation theory calculations for levulinic acid, see: Reichert et al. (2010 ▶); Kim et al. (2011 ▶). For typical bond lengths and angles, see: Allen et al. (1987 ▶); Borthwick (1980 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶). For background to the study, see: Flakus & Hachuła (2008 ▶); Flakus & Stachowska (2006 ▶).

Experimental

Crystal data

C5H8O3 M = 116.11 Monoclinic, a = 4.8761 (2) Å b = 12.1025 (4) Å c = 9.8220 (3) Å β = 99.112 (3)° V = 572.31 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.44 × 0.21 × 0.16 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire3 detector Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.585, T max = 1.000 7178 measured reflections 1013 independent reflections 902 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.114 S = 1.06 1013 reflections 77 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813021090/ff2114sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813021090/ff2114Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813021090/ff2114Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8O3F(000) = 248
Mr = 116.11Dx = 1.348 Mg m3
Monoclinic, P21/cMelting point = 303–306 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 4.8761 (2) ÅCell parameters from 6623 reflections
b = 12.1025 (4) Åθ = 3.4–34.5°
c = 9.8220 (3) ŵ = 0.11 mm1
β = 99.112 (3)°T = 100 K
V = 572.31 (3) Å3Polyhedron, colourless
Z = 40.44 × 0.21 × 0.16 mm
Oxford Diffraction Xcalibur diffractometer with a Sapphire3 detector1013 independent reflections
Radiation source: fine-focus sealed tube902 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
Detector resolution: 16.0328 pixels mm-1θmax = 25.1°, θmin = 3.4°
ω scanh = −5→4
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −14→14
Tmin = 0.585, Tmax = 1.000l = −11→11
7178 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0797P)2 + 0.128P] where P = (Fo2 + 2Fc2)/3
1013 reflections(Δ/σ)max < 0.001
77 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. CrysAlis RED (Oxford Diffraction, 2006). Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4194 (2)0.16988 (8)1.05179 (10)0.0186 (3)
O20.3930 (2)0.35384 (9)1.06449 (12)0.0286 (4)
O31.0589 (2)0.31839 (8)0.73324 (10)0.0197 (3)
C10.4836 (3)0.27238 (11)1.01688 (14)0.0159 (4)
C20.6782 (3)0.27359 (12)0.91177 (14)0.0164 (4)
H2A0.59320.23230.82880.020*
H2B0.85370.23610.95050.020*
C30.7411 (3)0.39098 (12)0.87113 (14)0.0170 (4)
H3A0.56410.42760.83280.020*
H3B0.82210.43190.95520.020*
C40.9364 (3)0.39950 (11)0.76733 (13)0.0163 (4)
C50.9722 (3)0.51213 (13)0.70857 (16)0.0242 (4)
H5A1.13940.51300.66480.036*
H5B0.99090.56710.78270.036*
H5C0.80970.52990.63980.036*
H10.311 (4)0.1766 (16)1.108 (2)0.036*
U11U22U33U12U13U23
O10.0253 (6)0.0186 (6)0.0137 (5)−0.0011 (4)0.0093 (4)0.0006 (4)
O20.0435 (7)0.0204 (6)0.0275 (7)0.0010 (5)0.0231 (5)−0.0016 (5)
O30.0240 (6)0.0218 (6)0.0148 (5)0.0025 (4)0.0072 (4)0.0001 (4)
C10.0200 (7)0.0187 (7)0.0088 (7)−0.0002 (6)0.0020 (5)0.0003 (5)
C20.0202 (7)0.0187 (8)0.0112 (7)0.0017 (5)0.0050 (5)−0.0009 (5)
C30.0218 (7)0.0183 (8)0.0118 (7)−0.0002 (5)0.0060 (6)−0.0015 (5)
C40.0183 (7)0.0207 (8)0.0092 (7)0.0000 (5)0.0001 (5)−0.0016 (6)
C50.0334 (8)0.0224 (8)0.0195 (8)0.0008 (6)0.0125 (6)0.0036 (6)
O1—C11.3373 (17)C3—C41.5050 (19)
O1—H10.83 (2)C3—H3A0.9900
O2—C11.2044 (17)C3—H3B0.9900
O3—C41.2231 (17)C4—C51.501 (2)
C1—C21.5092 (19)C5—H5A0.9800
C2—C31.520 (2)C5—H5B0.9800
C2—H2A0.9900C5—H5C0.9800
C2—H2B0.9900
C1—O1—H1106.3 (14)C4—C3—H3B108.6
O2—C1—O1123.01 (13)C2—C3—H3B108.6
O2—C1—C2124.51 (13)H3A—C3—H3B107.6
O1—C1—C2112.48 (12)O3—C4—C5122.14 (13)
C1—C2—C3111.32 (12)O3—C4—C3121.30 (12)
C1—C2—H2A109.4C5—C4—C3116.57 (12)
C3—C2—H2A109.4C4—C5—H5A109.5
C1—C2—H2B109.4C4—C5—H5B109.5
C3—C2—H2B109.4H5A—C5—H5B109.5
H2A—C2—H2B108.0C4—C5—H5C109.5
C4—C3—C2114.68 (12)H5A—C5—H5C109.5
C4—C3—H3A108.6H5B—C5—H5C109.5
C2—C3—H3A108.6
O2—C1—C2—C3−1.2 (2)C2—C3—C4—O3−8.66 (18)
O1—C1—C2—C3178.42 (10)C2—C3—C4—C5171.36 (11)
C1—C2—C3—C4179.46 (11)
D—H···AD—HH···AD···AD—H···A
O1—H1···O3i0.83 (2)1.87 (2)2.6977 (13)176 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O3i 0.83 (2)1.87 (2)2.6977 (13)176 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Conformational and thermodynamic properties of gaseous levulinic acid.

Authors:  Dirk Reichert; Alejandro Montoya; Xiao Liang; Henning Bockhorn; Brian S Haynes
Journal:  J Phys Chem A       Date:  2010-10-28       Impact factor: 2.781

  3 in total
  1 in total

1.  (S,Z)-3-Phenyl-2-[(1,1,1-tri-chloro-7-meth-oxy-2,7-dioxohept-3-en-4-yl)amino]-propanoic acid monohydrate.

Authors:  Alex Fabiani Claro Flores; Juliano Rosa de Menezes Vicenti; Lucas Pizzuti; Patrick Teixeira Campos
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-18
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.