Literature DB >> 24764860

2,3-Diphenyl-2,3,5,6-tetra-hydro-4H-1,3-thia-zin-4-one.

Hemant P Yennawar1, Lee J Silverberg2.   

Abstract

The six-membered thia-zine ring in the title compound, C16H15NOS, adopts a half-chair conformation, with the S atom forming the back of the chair. The base of the chair has a slight twist reflected in the r.m.s. deviation (0.0756 Å) of those five atoms from the plane defined by them. The phenyl substituents are almost perpendicular to each other [dihedral angle 87.06 (9)°]. In the crystal, mol-ecules are linked into chains parallel to the c axis through C-H⋯O inter-actions.

Entities:  

Year:  2014        PMID: 24764860      PMCID: PMC3998299          DOI: 10.1107/S1600536814000324

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a review of 1,3-thia­zin-4-ones, see: Ryabukhin et al. (1996 ▶). For an unsuccessful attempt to make the title compound, see: Surrey et al. (1958 ▶). For applications of 2,4,6-tripropyl-1,3,5,2,4,6-trioxatri­phospho­rinane-2,4,6-trioxide (T3P) in the synthesis of amide bonds and heterocycles, see: Dunetz et al. (2011 ▶); Unsworth et al. (2013 ▶). For the synthesis and structures of related compounds, see: Yennawar et al. (2013 ▶); Yennawar & Silverberg (2013 ▶).

Experimental

Crystal data

C16H15NOS M = 269.35 Monoclinic, a = 13.745 (3) Å b = 8.240 (2) Å c = 12.151 (3) Å β = 100.079 (6)° V = 1355.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 298 K 0.20 × 0.18 × 0.07 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.956, T max = 0.984 12350 measured reflections 3342 independent reflections 2558 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.140 S = 1.13 3342 reflections 172 parameters H-atom parameters not refined Δρmax = 0.31 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT (Bruker, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814000324/fy2109sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814000324/fy2109Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814000324/fy2109Isup3.mol Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814000324/fy2109Isup4.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H15NOSF(000) = 568
Mr = 269.35Dx = 1.320 Mg m3
Monoclinic, P21/cMelting point: 369 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 13.745 (3) ÅCell parameters from 2176 reflections
b = 8.240 (2) Åθ = 2.9–24.6°
c = 12.151 (3) ŵ = 0.23 mm1
β = 100.079 (6)°T = 298 K
V = 1355.0 (6) Å3Block, colorless
Z = 40.20 × 0.18 × 0.07 mm
Bruker SMART APEX CCD diffractometer3342 independent reflections
Radiation source: fine-focus sealed tube2558 reflections with I > 2σ(I)
Parallel, graphite monochromatorRint = 0.041
Detector resolution: 8.34 pixels mm-1θmax = 28.3°, θmin = 2.9°
φ and ω scansh = −18→18
Absorption correction: multi-scan (SADABS; Bruker, 2001)k = −10→10
Tmin = 0.956, Tmax = 0.984l = −16→15
12350 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters not refined
S = 1.13w = 1/[σ2(Fo2) + (0.0575P)2 + 0.2756P] where P = (Fo2 + 2Fc2)/3
3342 reflections(Δ/σ)max = 0.001
172 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.70658 (15)0.2133 (3)0.70023 (17)0.0367 (5)
C20.59588 (16)0.2058 (3)0.66146 (19)0.0443 (5)
H2A0.57050.31580.66000.053*
H2B0.58380.16640.58510.053*
C30.53595 (16)0.1031 (3)0.72800 (19)0.0468 (6)
H3A0.5481−0.01100.71620.056*
H3B0.46610.12390.70350.056*
C40.69656 (14)0.0797 (2)0.88595 (16)0.0306 (4)
H40.73130.12140.95770.037*
C50.70157 (14)−0.1039 (2)0.89528 (16)0.0317 (4)
C60.73750 (16)−0.2034 (3)0.8207 (2)0.0433 (5)
H60.7584−0.15870.75850.052*
C70.74288 (18)−0.3710 (3)0.8377 (3)0.0586 (7)
H70.7670−0.43760.78680.070*
C80.71254 (19)−0.4369 (3)0.9293 (3)0.0625 (8)
H80.7166−0.54840.94110.075*
C90.6762 (2)−0.3388 (3)1.0037 (2)0.0606 (7)
H90.6550−0.38401.06550.073*
C100.67093 (18)−0.1745 (3)0.98732 (19)0.0475 (6)
H100.6465−0.10911.03860.057*
C110.85580 (14)0.1465 (3)0.82879 (18)0.0367 (5)
C120.91089 (17)0.0689 (3)0.7593 (2)0.0535 (6)
H120.87960.01990.69360.064*
C131.0121 (2)0.0647 (4)0.7881 (3)0.0781 (9)
H131.04920.01180.74200.094*
C141.0589 (2)0.1379 (5)0.8843 (3)0.0823 (11)
H141.12740.13560.90280.099*
C151.0044 (2)0.2145 (4)0.9531 (3)0.0749 (9)
H151.03620.26371.01850.090*
C160.90219 (17)0.2192 (3)0.9258 (2)0.0524 (6)
H160.86530.27110.97270.063*
N10.74904 (11)0.14718 (19)0.79997 (13)0.0316 (4)
O10.75623 (12)0.2813 (2)0.64049 (14)0.0575 (5)
S10.57039 (4)0.15171 (7)0.87256 (5)0.04271 (18)
U11U22U33U12U13U23
C10.0418 (11)0.0387 (11)0.0300 (10)0.0028 (9)0.0075 (9)0.0028 (9)
C20.0424 (12)0.0530 (13)0.0352 (12)0.0065 (10)0.0006 (9)0.0050 (10)
C30.0327 (11)0.0543 (13)0.0510 (14)0.0016 (10)0.0008 (10)−0.0004 (11)
C40.0321 (10)0.0345 (10)0.0260 (9)−0.0025 (8)0.0073 (8)−0.0002 (8)
C50.0271 (9)0.0337 (10)0.0324 (10)−0.0023 (7)−0.0001 (8)0.0023 (8)
C60.0378 (11)0.0417 (12)0.0525 (14)−0.0020 (9)0.0138 (10)−0.0028 (10)
C70.0433 (13)0.0410 (13)0.094 (2)0.0012 (10)0.0176 (13)−0.0159 (14)
C80.0509 (14)0.0345 (12)0.096 (2)−0.0045 (11)−0.0033 (14)0.0155 (14)
C90.0751 (19)0.0483 (15)0.0552 (16)−0.0134 (13)0.0024 (14)0.0187 (13)
C100.0596 (15)0.0456 (13)0.0380 (12)−0.0084 (11)0.0105 (11)0.0057 (10)
C110.0304 (10)0.0388 (11)0.0416 (12)−0.0023 (8)0.0079 (8)0.0100 (9)
C120.0406 (13)0.0620 (16)0.0622 (16)−0.0002 (11)0.0210 (12)0.0015 (13)
C130.0433 (15)0.101 (2)0.096 (2)0.0096 (15)0.0308 (16)0.016 (2)
C140.0302 (13)0.116 (3)0.100 (3)−0.0001 (15)0.0103 (16)0.032 (2)
C150.0471 (16)0.099 (2)0.071 (2)−0.0182 (16)−0.0107 (14)0.0139 (17)
C160.0413 (13)0.0632 (16)0.0502 (14)−0.0058 (11)0.0010 (11)0.0036 (12)
N10.0297 (8)0.0362 (9)0.0296 (8)−0.0012 (7)0.0073 (6)0.0046 (7)
O10.0549 (10)0.0746 (12)0.0447 (10)−0.0011 (9)0.0138 (8)0.0237 (9)
S10.0376 (3)0.0476 (3)0.0466 (3)0.0076 (2)0.0176 (2)0.0004 (3)
C1—O11.217 (2)C7—H70.9300
C1—N11.363 (3)C8—C91.370 (4)
C1—C21.513 (3)C8—H80.9300
C2—C31.511 (3)C9—C101.368 (3)
C2—H2A0.9700C9—H90.9300
C2—H2B0.9700C10—H100.9300
C3—S11.783 (2)C11—C161.376 (3)
C3—H3A0.9700C11—C121.385 (3)
C3—H3B0.9700C11—N11.448 (2)
C4—N11.478 (2)C12—C131.374 (4)
C4—C51.518 (3)C12—H120.9300
C4—S11.813 (2)C13—C141.371 (5)
C4—H40.9800C13—H130.9300
C5—C61.377 (3)C14—C151.370 (5)
C5—C101.390 (3)C14—H140.9300
C6—C71.396 (3)C15—C161.387 (4)
C6—H60.9300C15—H150.9300
C7—C81.368 (4)C16—H160.9300
O1—C1—N1121.12 (19)C7—C8—H8120.0
O1—C1—C2118.13 (19)C9—C8—H8120.0
N1—C1—C2120.75 (18)C10—C9—C8120.3 (2)
C3—C2—C1117.96 (18)C10—C9—H9119.9
C3—C2—H2A107.8C8—C9—H9119.9
C1—C2—H2A107.8C9—C10—C5121.0 (2)
C3—C2—H2B107.8C9—C10—H10119.5
C1—C2—H2B107.8C5—C10—H10119.5
H2A—C2—H2B107.2C16—C11—C12120.2 (2)
C2—C3—S1109.00 (16)C16—C11—N1120.3 (2)
C2—C3—H3A109.9C12—C11—N1119.6 (2)
S1—C3—H3A109.9C13—C12—C11119.6 (3)
C2—C3—H3B109.9C13—C12—H12120.2
S1—C3—H3B109.9C11—C12—H12120.2
H3A—C3—H3B108.3C14—C13—C12120.6 (3)
N1—C4—C5113.97 (16)C14—C13—H13119.7
N1—C4—S1113.02 (13)C12—C13—H13119.7
C5—C4—S1111.29 (13)C15—C14—C13119.9 (3)
N1—C4—H4105.9C15—C14—H14120.1
C5—C4—H4105.9C13—C14—H14120.1
S1—C4—H4105.9C14—C15—C16120.4 (3)
C6—C5—C10118.4 (2)C14—C15—H15119.8
C6—C5—C4124.14 (19)C16—C15—H15119.8
C10—C5—C4117.46 (18)C11—C16—C15119.4 (3)
C5—C6—C7120.5 (2)C11—C16—H16120.3
C5—C6—H6119.8C15—C16—H16120.3
C7—C6—H6119.8C1—N1—C11118.34 (16)
C8—C7—C6119.8 (2)C1—N1—C4126.35 (16)
C8—C7—H7120.1C11—N1—C4115.27 (15)
C6—C7—H7120.1C3—S1—C495.72 (10)
C7—C8—C9120.0 (2)
O1—C1—C2—C3172.2 (2)C13—C14—C15—C16−0.3 (5)
N1—C1—C2—C3−8.5 (3)C12—C11—C16—C150.2 (4)
C1—C2—C3—S149.0 (2)N1—C11—C16—C15178.7 (2)
N1—C4—C5—C6−9.7 (3)C14—C15—C16—C11−0.1 (4)
S1—C4—C5—C6119.51 (19)O1—C1—N1—C11−5.6 (3)
N1—C4—C5—C10167.98 (17)C2—C1—N1—C11175.19 (19)
S1—C4—C5—C10−62.8 (2)O1—C1—N1—C4172.0 (2)
C10—C5—C6—C7−0.1 (3)C2—C1—N1—C4−7.2 (3)
C4—C5—C6—C7177.6 (2)C16—C11—N1—C1122.7 (2)
C5—C6—C7—C8−0.2 (4)C12—C11—N1—C1−58.8 (3)
C6—C7—C8—C90.5 (4)C16—C11—N1—C4−55.1 (3)
C7—C8—C9—C10−0.6 (4)C12—C11—N1—C4123.4 (2)
C8—C9—C10—C50.3 (4)C5—C4—N1—C1108.3 (2)
C6—C5—C10—C90.0 (3)S1—C4—N1—C1−20.1 (2)
C4—C5—C10—C9−177.9 (2)C5—C4—N1—C11−74.1 (2)
C16—C11—C12—C130.2 (4)S1—C4—N1—C11157.54 (14)
N1—C11—C12—C13−178.4 (2)C2—C3—S1—C4−64.60 (17)
C11—C12—C13—C14−0.6 (4)N1—C4—S1—C351.31 (16)
C12—C13—C14—C150.7 (5)C5—C4—S1—C3−78.43 (16)
D—H···AD—HH···AD···AD—H···A
C4—H4···O1i0.982.333.265 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O1i 0.982.333.265 (3)159

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  General and scalable amide bond formation with epimerization-prone substrates using T3P and pyridine.

Authors:  Joshua R Dunetz; Yanqiao Xiang; Aaron Baldwin; Justin Ringling
Journal:  Org Lett       Date:  2011-08-29       Impact factor: 6.005

3.  Direct imine acylation: rapid access to diverse heterocyclic scaffolds.

Authors:  William P Unsworth; Christiana Kitsiou; Richard J K Taylor
Journal:  Org Lett       Date:  2012-12-24       Impact factor: 6.005

4.  2-(3-Nitro-phen-yl)-3-phenyl-2,3-di-hydro-4H-1,3-benzo-thia-zin-4-one.

Authors:  Hemant P Yennawar; Lee J Silverberg; Michael J Minehan; John Tierney
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-23

5.  6,7-Diphenyl-5-thia-7-aza-spiro-[2.6]nonan-8-one.

Authors:  Hemant P Yennawar; Lee J Silverberg
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-19
  5 in total
  9 in total

1.  Synthesis and crystal structure of racemic (R*,R*)-2,2'-(1,4-phenyl-ene)bis-(3-phenyl-2,3,5,6-tetra-hydro-4H-1,3-thia-zin-4-one).

Authors:  Hemant P Yennawar; Joseph J Medica; Lee J Silverberg
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-11-09

2.  Crystal structure of N-[(2S,5R)-4-oxo-2,3-diphenyl-1,3-thia-zinan-5-yl]acetamide 0.375-hydrate.

Authors:  Hemant P Yennawar; Harnoor Singh; Lee J Silverberg
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01

3.  Erratum: 2,3-Diphenyl-2,3,5,6-tetra-hydro-4H-1,3-thia-zin-4-one. Corrigendum.

Authors:  Hemant P Yennawar; Lee J Silverberg
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-12-06

4.  Crystal structure of rac-2,3-diphenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one 1-oxide.

Authors:  Hemant P Yennawar; Ziwei Yang; Lee J Silverberg
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-10-07

5.  Crystal structure of meso-3,3'-(1,4-phenyl-ene)bis-(2-phenyl-2,3,5,6-tetra-hydro-4H-1,3-thia-zin-4-one).

Authors:  Hemant P Yennawar; Quentin J Moyer; Lee J Silverberg
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-09-28

6.  2,3-Diphenyl-2,3-di-hydro-4H-1,3-benzo-thia-zin-4-one.

Authors:  Hemant P Yennawar; Ryan V Bendinsky; David J Coyle; Aaron S Cali; Lee J Silverberg
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-22

7.  2,3-Diphenyl-2,3-di-hydro-4H-pyrido[3,2-e][1,3]thia-zin-4-one.

Authors:  Hemant P Yennawar; Harnoor Singh; Lee J Silverberg
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-03

8.  2,3-Diphenyl-1,3-thia-zolidin-4-one.

Authors:  Hemant P Yennawar; John Tierney; Lee J Silverberg
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-02

9.  Crystal structure of the 1:1 adduct of 2,3-diphenyl-3,4,5,6-tetra-hydro-2H-1,3-thia-zin-4-one with tri-phenyl-tin chloride.

Authors:  Hemant P Yennawar; Ryan Fox; Lee J Silverberg
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-02-03
  9 in total

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