Literature DB >> 24764835

N-(3-Chloro-1,4-dioxo-1,4-di-hydro-naph-thalen-2-yl)-N-propionylpropionamide.

Nabil Idris1, Ray J Butcher1, Oladapo Bakare1.   

Abstract

In the title mol-ecule, C16H14ClNO4, the four essentially planar atoms of the imide group [r.m.s. deviation = 0.0286 (11) Å] form a dihedral angle of 77.36 (13)° with the naphtho-quinone group [maximun deviation = 0.111 (2) Å for the carbonyl O atom in the naphthalene 1-position] and the two imide carbonyl groups are oriented anti with respect to each other. In the crystal, mol-ecules are connected by weak C-H⋯O hydrogen bonds, as well as π-π stacking inter-actions [centroid-centroid distance = 3.888 (3) Å], forming a three-dimensional network.

Entities:  

Year:  2014        PMID: 24764835      PMCID: PMC3998274          DOI: 10.1107/S1600536813034302

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological evaluation of imido-substituted 1,4-naphtho­quinone derivatives, see: Bakare et al. (2003 ▶); Berhe et al. (2008 ▶); Brandy et al. (2013 ▶). For the anti­cancer and anti­trypanosomal activity of related compounds, see: Bakare et al. (2003 ▶); Berhe et al. (2008 ▶); Khraiwesh et al. (2012 ▶). For a related structure, see: Butcher et al. (2013 ▶).

Experimental

Crystal data

C16H14ClNO4 M = 319.73 Triclinic, a = 8.1362 (9) Å b = 8.2254 (9) Å c = 12.4471 (11) Å α = 98.105 (8)° β = 92.297 (8)° γ = 116.821 (11)° V = 730.88 (15) Å3 Z = 2 Cu Kα radiation μ = 2.48 mm−1 T = 123 K 0.48 × 0.34 × 0.08 mm

Data collection

Agilent Xcalibur (Ruby, Gemini) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.396, T max = 1.000 4648 measured reflections 2908 independent reflections 2419 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.115 S = 1.01 2908 reflections 201 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813034302/lh5677sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813034302/lh5677Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813034302/lh5677Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H14ClNO4Z = 2
Mr = 319.73F(000) = 332
Triclinic, P1Dx = 1.453 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 8.1362 (9) ÅCell parameters from 1754 reflections
b = 8.2254 (9) Åθ = 3.6–75.0°
c = 12.4471 (11) ŵ = 2.48 mm1
α = 98.105 (8)°T = 123 K
β = 92.297 (8)°Plate, colorless
γ = 116.821 (11)°0.48 × 0.34 × 0.08 mm
V = 730.88 (15) Å3
Agilent Xcalibur (Ruby, Gemini) diffractometer2908 independent reflections
Radiation source: Enhance (Cu) X-ray Source2419 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
Detector resolution: 10.5081 pixels mm-1θmax = 75.2°, θmin = 3.6°
ω scansh = −10→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −8→10
Tmin = 0.396, Tmax = 1.000l = −15→15
4648 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0653P)2] where P = (Fo2 + 2Fc2)/3
2908 reflections(Δ/σ)max < 0.001
201 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.34840 (7)0.42387 (7)0.70172 (4)0.02795 (15)
O10.3577 (2)0.2807 (2)0.47615 (11)0.0272 (3)
O20.9546 (2)0.4037 (2)0.73820 (12)0.0297 (3)
O30.6017 (2)0.1818 (2)0.85542 (12)0.0298 (3)
O40.7362 (2)0.7230 (2)0.96429 (12)0.0313 (3)
N10.6911 (2)0.4761 (2)0.83472 (13)0.0217 (3)
C10.5193 (3)0.3762 (3)0.65414 (16)0.0210 (4)
C20.4900 (3)0.2978 (3)0.53419 (15)0.0212 (4)
C30.6266 (3)0.2389 (3)0.49340 (15)0.0208 (4)
C40.5978 (3)0.1483 (3)0.38574 (15)0.0236 (4)
H4A0.49340.12830.33850.028*
C50.7225 (3)0.0869 (3)0.34745 (16)0.0254 (4)
H5A0.70260.02430.27420.031*
C60.8766 (3)0.1177 (3)0.41683 (17)0.0264 (4)
H6A0.96100.07510.39070.032*
C70.9074 (3)0.2096 (3)0.52347 (16)0.0253 (4)
H7A1.01370.23200.56990.030*
C80.7822 (3)0.2692 (3)0.56247 (15)0.0211 (4)
C90.8146 (3)0.3624 (3)0.67823 (15)0.0215 (4)
C100.6669 (3)0.4052 (3)0.72075 (15)0.0205 (4)
C110.6645 (3)0.3405 (3)0.90111 (15)0.0227 (4)
C120.7214 (3)0.4027 (3)1.02245 (15)0.0255 (4)
H12A0.63920.45071.05470.031*
H12B0.84980.50491.03590.031*
C130.7112 (4)0.2455 (3)1.07811 (17)0.0386 (6)
H13A0.75540.29261.15600.058*
H13B0.78920.19491.04460.058*
H13C0.58250.14791.06950.058*
C140.7498 (3)0.6667 (3)0.87202 (15)0.0223 (4)
C150.8322 (3)0.7895 (3)0.78881 (16)0.0268 (4)
H15A0.73560.75540.72700.032*
H15B0.93320.76710.76000.032*
C160.9083 (4)0.9933 (3)0.83514 (19)0.0380 (5)
H16A0.95911.06590.77770.057*
H16B1.00671.02900.89500.057*
H16C0.80861.01700.86270.057*
U11U22U33U12U13U23
Cl10.0231 (2)0.0398 (3)0.0226 (2)0.0178 (2)0.00071 (17)−0.00015 (18)
O10.0246 (7)0.0381 (8)0.0195 (7)0.0158 (7)−0.0031 (5)0.0034 (6)
O20.0244 (7)0.0406 (9)0.0231 (7)0.0168 (7)−0.0043 (6)−0.0023 (6)
O30.0371 (8)0.0241 (7)0.0218 (7)0.0096 (6)−0.0017 (6)0.0026 (6)
O40.0405 (9)0.0310 (8)0.0207 (7)0.0158 (7)0.0053 (6)0.0020 (6)
N10.0220 (8)0.0260 (9)0.0156 (7)0.0105 (7)−0.0002 (6)0.0018 (6)
C10.0184 (9)0.0242 (9)0.0206 (9)0.0103 (8)0.0026 (7)0.0032 (7)
C20.0210 (9)0.0223 (9)0.0174 (9)0.0072 (8)0.0009 (7)0.0054 (7)
C30.0199 (9)0.0210 (9)0.0182 (9)0.0063 (7)0.0028 (7)0.0049 (7)
C40.0265 (10)0.0235 (10)0.0173 (9)0.0085 (8)0.0001 (7)0.0045 (7)
C50.0317 (11)0.0244 (10)0.0165 (9)0.0101 (9)0.0040 (8)0.0021 (7)
C60.0262 (10)0.0295 (10)0.0249 (10)0.0134 (9)0.0066 (8)0.0054 (8)
C70.0222 (9)0.0289 (10)0.0229 (10)0.0103 (8)0.0011 (7)0.0038 (8)
C80.0207 (9)0.0223 (9)0.0182 (9)0.0080 (8)0.0015 (7)0.0037 (7)
C90.0198 (9)0.0231 (9)0.0197 (9)0.0084 (8)−0.0003 (7)0.0042 (7)
C100.0219 (9)0.0203 (9)0.0168 (9)0.0078 (8)0.0016 (7)0.0030 (7)
C110.0206 (9)0.0267 (10)0.0200 (9)0.0099 (8)0.0025 (7)0.0053 (8)
C120.0280 (10)0.0265 (10)0.0180 (9)0.0091 (8)0.0009 (8)0.0045 (7)
C130.0584 (15)0.0346 (12)0.0186 (10)0.0182 (11)−0.0043 (10)0.0059 (8)
C140.0199 (9)0.0270 (10)0.0190 (9)0.0104 (8)−0.0003 (7)0.0030 (7)
C150.0297 (10)0.0287 (11)0.0206 (9)0.0122 (9)0.0022 (8)0.0048 (8)
C160.0511 (14)0.0274 (12)0.0303 (11)0.0141 (11)0.0047 (10)0.0038 (9)
Cl1—C11.7117 (19)C7—C81.392 (3)
O1—C21.214 (2)C7—H7A0.9500
O2—C91.217 (2)C8—C91.486 (3)
O3—C111.206 (3)C9—C101.492 (3)
O4—C141.205 (2)C11—C121.507 (3)
N1—C141.416 (3)C12—C131.523 (3)
N1—C111.425 (2)C12—H12A0.9900
N1—C101.425 (2)C12—H12B0.9900
C1—C101.339 (3)C13—H13A0.9800
C1—C21.504 (3)C13—H13B0.9800
C2—C31.480 (3)C13—H13C0.9800
C3—C41.394 (3)C14—C151.510 (3)
C3—C81.404 (3)C15—C161.512 (3)
C4—C51.394 (3)C15—H15A0.9900
C4—H4A0.9500C15—H15B0.9900
C5—C61.395 (3)C16—H16A0.9800
C5—H5A0.9500C16—H16B0.9800
C6—C71.384 (3)C16—H16C0.9800
C6—H6A0.9500
C14—N1—C11126.40 (16)N1—C10—C9116.65 (16)
C14—N1—C10120.34 (16)O3—C11—N1117.25 (17)
C11—N1—C10113.08 (16)O3—C11—C12123.88 (18)
C10—C1—C2123.02 (17)N1—C11—C12118.84 (17)
C10—C1—Cl1121.46 (15)C11—C12—C13111.82 (17)
C2—C1—Cl1115.52 (14)C11—C12—H12A109.3
O1—C2—C3122.90 (17)C13—C12—H12A109.3
O1—C2—C1120.67 (17)C11—C12—H12B109.3
C3—C2—C1116.41 (16)C13—C12—H12B109.3
C4—C3—C8119.68 (18)H12A—C12—H12B107.9
C4—C3—C2119.45 (17)C12—C13—H13A109.5
C8—C3—C2120.85 (17)C12—C13—H13B109.5
C3—C4—C5119.94 (18)H13A—C13—H13B109.5
C3—C4—H4A120.0C12—C13—H13C109.5
C5—C4—H4A120.0H13A—C13—H13C109.5
C4—C5—C6119.90 (18)H13B—C13—H13C109.5
C4—C5—H5A120.1O4—C14—N1121.10 (18)
C6—C5—H5A120.1O4—C14—C15123.97 (18)
C7—C6—C5120.52 (18)N1—C14—C15114.92 (16)
C7—C6—H6A119.7C14—C15—C16113.04 (17)
C5—C6—H6A119.7C14—C15—H15A109.0
C6—C7—C8119.80 (18)C16—C15—H15A109.0
C6—C7—H7A120.1C14—C15—H15B109.0
C8—C7—H7A120.1C16—C15—H15B109.0
C7—C8—C3120.15 (18)H15A—C15—H15B107.8
C7—C8—C9118.99 (17)C15—C16—H16A109.5
C3—C8—C9120.86 (17)C15—C16—H16B109.5
O2—C9—C8122.72 (18)H16A—C16—H16B109.5
O2—C9—C10119.76 (18)C15—C16—H16C109.5
C8—C9—C10117.51 (16)H16A—C16—H16C109.5
C1—C10—N1122.45 (17)H16B—C16—H16C109.5
C1—C10—C9120.90 (17)
C10—C1—C2—O1−177.09 (19)Cl1—C1—C10—N10.3 (3)
Cl1—C1—C2—O13.8 (3)C2—C1—C10—C90.8 (3)
C10—C1—C2—C34.7 (3)Cl1—C1—C10—C9179.78 (14)
Cl1—C1—C2—C3−174.35 (14)C14—N1—C10—C1−76.6 (2)
O1—C2—C3—C4−4.5 (3)C11—N1—C10—C1107.9 (2)
C1—C2—C3—C4173.66 (17)C14—N1—C10—C9103.9 (2)
O1—C2—C3—C8177.06 (19)C11—N1—C10—C9−71.6 (2)
C1—C2—C3—C8−4.8 (3)O2—C9—C10—C1174.07 (19)
C8—C3—C4—C50.5 (3)C8—C9—C10—C1−6.1 (3)
C2—C3—C4—C5−177.96 (17)O2—C9—C10—N1−6.5 (3)
C3—C4—C5—C6−0.5 (3)C8—C9—C10—N1173.41 (16)
C4—C5—C6—C7−0.3 (3)C14—N1—C11—O3175.03 (18)
C5—C6—C7—C81.1 (3)C10—N1—C11—O3−9.8 (2)
C6—C7—C8—C3−1.0 (3)C14—N1—C11—C12−6.9 (3)
C6—C7—C8—C9178.09 (18)C10—N1—C11—C12168.24 (17)
C4—C3—C8—C70.2 (3)O3—C11—C12—C136.7 (3)
C2—C3—C8—C7178.70 (18)N1—C11—C12—C13−171.24 (19)
C4—C3—C8—C9−178.88 (17)C11—N1—C14—O4−19.9 (3)
C2—C3—C8—C9−0.4 (3)C10—N1—C14—O4165.21 (18)
C7—C8—C9—O26.6 (3)C11—N1—C14—C15158.81 (18)
C3—C8—C9—O2−174.25 (19)C10—N1—C14—C15−16.0 (2)
C7—C8—C9—C10−173.25 (17)O4—C14—C15—C163.9 (3)
C3—C8—C9—C105.9 (3)N1—C14—C15—C16−174.85 (18)
C2—C1—C10—N1−178.69 (17)
D—H···AD—HH···AD···AD—H···A
C5—H5A···O3i0.952.593.294 (2)131
C15—H15A···O1ii0.992.553.442 (2)150
C16—H16B···O4iii0.982.543.425 (3)150
C16—H16C···O3iv0.982.603.482 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5A⋯O3i 0.952.593.294 (2)131
C15—H15A⋯O1ii 0.992.553.442 (2)150
C16—H16B⋯O4iii 0.982.543.425 (3)150
C16—H16C⋯O3iv 0.982.603.482 (3)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antitrypanosomal activities and cytotoxicity of some novel imido-substituted 1,4-naphthoquinone derivatives.

Authors:  Mozna H Khraiwesh; Clarence M Lee; Yakini Brandy; Emmanuel S Akinboye; Solomon Berhe; Genelle Gittens; Muneer M Abbas; Franklin R Ampy; Mohammad Ashraf; Oladapo Bakare
Journal:  Arch Pharm Res       Date:  2012-02-02       Impact factor: 4.946

3.  Synthesis and MEK1 inhibitory activities of imido-substituted 2-chloro-1,4-naphthoquinones.

Authors:  Oladapo Bakare; Curtis L Ashendel; Hairuo Peng; Leon H Zalkow; Edward M Burgess
Journal:  Bioorg Med Chem       Date:  2003-07-17       Impact factor: 3.641

4.  Synthesis and characterization of novel unsymmetrical and symmetrical 3-halo- or 3-methoxy-substituted 2-dibenzoylamino-1,4-naphthoquinone derivatives.

Authors:  Yakini Brandy; Nailah Brandy; Emmanuel Akinboye; Malik Lewis; Claudia Mouamba; Seshat Mack; Ray J Butcher; Alan J Anderson; Oladapo Bakare
Journal:  Molecules       Date:  2013-02-04       Impact factor: 4.411

5.  N-Butanoyl-N-(3-chloro-1,4-dioxonaph-thalen-2-yl)butanamide.

Authors:  Ray J Butcher; Solomon Berhe; Alan J Anderson; Oladapo Bakare
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-10
  5 in total

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