Literature DB >> 24757326

Genetic diversity and geographical differentiation of Iranian landrace, cultivars, and exotic chickpea lines as revealed by morphological and microsatellite markers.

Parvin Ghaffari1, Reza Talebi2, Fatemeh Keshavarzi3.   

Abstract

Assessment of the extent of genetic variability within chickpea is fundamental for chickpea breeding and conservation of genetic resources and is particularly useful as a general guide in the choice of parents for breeding hybrids. To establish genetic diversity among 60 accessions of chickpea comprising landraces, internationally developed improved lines, and cultivars, genetic distances were evaluated using 14 simple sequence repeat markers. These markers showed a high level of polymorphism; a total of 59 different alleles were detected, with a mean of 4.2 alleles per locus. The polymorphic information content (PIC) value ranged from 0.31 to 0.89. All the markers, with the exception of TAA170, TA110, GA34, and Ts35, were considered to be informative (PIC > 0.5), indicating their potential usefulness for cultivar identification. Based on the UNJ clustering method, all accessions were clustered in five groups, which indicated the probable origin and region similarity of Iranian landraces over the other cultivars. It also represents a wide diversity among available germplasm. The result has firmly established that introduction of genetic materials from exotic sources has broadened the genetic base of the national chickpea breeding program. As further implications of the findings, this study can be useful for selective breeding for specific traits and in enhancing the genetic base of breeding programs.

Entities:  

Keywords:  Chickpea; Cultivar; Genetic diversity; Landrace; SSR markers

Year:  2014        PMID: 24757326      PMCID: PMC3988336          DOI: 10.1007/s12298-014-0223-9

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN: 0974-0430


  4 in total

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Review 2.  Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors:  D Botstein; R L White; M Skolnick; R W Davis
Journal:  Am J Hum Genet       Date:  1980-05       Impact factor: 11.025

3.  Genetic structure and diversity analysis of the primary gene pool of chickpea using SSR markers.

Authors:  P Choudhary; S M Khanna; P K Jain; C Bharadwaj; J Kumar; P C Lakhera; R Srinivasan
Journal:  Genet Mol Res       Date:  2012-04-10

4.  GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update.

Authors:  Rod Peakall; Peter E Smouse
Journal:  Bioinformatics       Date:  2012-07-20       Impact factor: 6.937

  4 in total
  8 in total

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Journal:  Physiol Mol Biol Plants       Date:  2015-07-04

2.  Whole-genome diversity, population structure and linkage disequilibrium analysis of globally diverse wheat genotypes using genotyping-by-sequencing DArTseq platform.

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Journal:  3 Biotech       Date:  2020-01-14       Impact factor: 2.406

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Journal:  3 Biotech       Date:  2018-01-02       Impact factor: 2.406

4.  SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas.

Authors:  Asma Hamid Mir; Mohd Ashraf Bhat; Humara Fayaz; Aijaz A Wani; Sher A Dar; Showkat Maqbool; Mohammad Yasin; Javid Iqbal Mir; Mohd Anwar Khan; Parvaze A Sofi; Ahmed H El-Sappah; Mahendar Thudi; Rajeev Kumar Varshney; Reyazul Rouf Mir
Journal:  Mol Biol Rep       Date:  2022-08-25       Impact factor: 2.742

5.  Genetic diversity and population structure detection in sponge gourd (Luffa cylindrica) using ISSR, SCoT and morphological markers.

Authors:  Ruchi Tyagi; Vinay Sharma; Amish Kumar Sureja; Anilabh Das Munshi; Lalit Arya; Dipnarayan Saha; Manjusha Verma
Journal:  Physiol Mol Biol Plants       Date:  2019-11-26

6.  Whole Genome Diversity, Population Structure, and Linkage Disequilibrium Analysis of Chickpea (Cicer arietinum L.) Genotypes Using Genome-Wide DArTseq-Based SNP Markers.

Authors:  Somayeh Farahani; Mojdeh Maleki; Rahim Mehrabi; Homayoun Kanouni; Armin Scheben; Jacqueline Batley; Reza Talebi
Journal:  Genes (Basel)       Date:  2019-09-04       Impact factor: 4.096

7.  Pathogenic Diversity of Ascochyta rabiei Isolates and Identification of Resistance Sources in Core Collection of Chickpea Germplasm.

Authors:  Somayeh Farahani; Reza Talebi; Mojdeh Maleki; Rahim Mehrabi; Homayoun Kanouni
Journal:  Plant Pathol J       Date:  2019-08-01       Impact factor: 1.795

8.  Genetic variability and population structure of Ethiopian chickpea (Cicer arietinum L.) germplasm.

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Journal:  PLoS One       Date:  2021-11-29       Impact factor: 3.240

  8 in total

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