| Literature DB >> 24748328 |
Dorota Jurkiewicz1, Dorota Gliwicz, Elżbieta Ciara, Jennifer Gerfen, Magdalena Pelc, Dorota Piekutowska-Abramczuk, Monika Kugaudo, Krystyna Chrzanowska, Nancy B Spinner, Małgorzata Krajewska-Walasek.
Abstract
Alagille syndrome (ALGS) is an autosomal dominant disorder characterized by developmental abnormalities in several organs including the liver, heart, eyes, vertebrae, kidneys, and face. The majority (90-94%) of ALGS cases are caused by mutations in the JAG1 (JAGGED1) gene, and in a small percent of patients (∼1%) mutations in the NOTCH2 gene have been described. Both genes are involved in the Notch signaling pathway. To date, over 440 different JAG1 gene mutations and ten NOTCH2 mutations have been identified in ALGS patients. The present study was conducted on a group of 35 Polish ALGS patients and revealed JAG1 gene mutations in 26 of them. Twenty-three different mutations were detected including 13 novel point mutations and six large deletions affecting the JAG1 gene. Review of all mutations identified to date in individuals from Poland allowed us to propose an effective diagnostic strategy based on the mutations identified in the reported patients of Polish descent. However, the distribution of mutations seen in this cohort was not substantively different than the mutation distribution in other reported populations.Entities:
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Year: 2014 PMID: 24748328 PMCID: PMC4102774 DOI: 10.1007/s13353-014-0212-2
Source DB: PubMed Journal: J Appl Genet ISSN: 1234-1983 Impact factor: 3.240
The JAG1 gene mutations in Polish ALGS patients. All mutations identified in the current study as well as mutations detected in previous studies (Giannakudis et al. 2001; Stankiewicz et al. 2001; Röpke et al. 2003; Jurkiewicz et al. 2005, 2006) are shown
| Patient No. | Exon or intron | Mutation position a | Predicted consequence | Protein domain b | Origin c | Phenotype d | Reference | |
|---|---|---|---|---|---|---|---|---|
| Frameshift | 1 | Ex 2 | c.172_178del7 | p.(Ala58fs) | SP-DSL | NM | L, H, E, F | Jurkiewicz et al. ( |
| 2 | Ex 4 | c.509delT | p.(Leu170fs) | SP-DSL | NM | L, H, E, F | Jurkiewicz et al. ( | |
| 3 | Ex 7 | c.929delG | p.(Gly310fs) | EGF3 | de novo | L, E, V, F | This study | |
| 4 | Ex 9 | c.1197delG | p.(Val399fs) | EGF5 | de novo | L, H, F | Jurkiewicz et al. ( | |
| 5 | Ex 12 | c.1456_1457delAG | p.(Arg486fs) | EGF7 | de novo | L, H, E, F | Jurkiewicz et al. ( | |
| 6 | Ex 12 | c.1485_1486delCT | p.(Pro495fs) | EGF8 | de novo | L, H, E, V, F | Jurkiewicz et al. ( | |
| 7 | Ex 14 |
| p.(Thr579fs) | EGF10 | de novo | L, H, E, V?, F | This study | |
| 8 | Ex 14 | c.1809_1810insTGGG | p.(Lys604fs) | EGF10 | maternal | L, H ,E, F | Jurkiewicz et al. ( | |
| 9 | Ex 15 |
| p.(Cys633fs) | EGF11 | de novo | L, H, V, F, R | This study | |
| 10 | Ex 16 | c.2065_2066delTT | p.(Phe689fs) | EGF12 | de novo | L, H, E, F | Röpke et al. ( | |
| 11 | Ex 17 | c.2122_2125delCAGT | p.(Gln708fs) | EGF13 | ND | L, H, E, F | Jurkiewicz et al. ( | |
| 12 | Ex 18 | c.2250delC | p.(Pro750fs) | EGF14 | de novo | L, H, V, F | Röpke et al. ( | |
| 13 | Ex 22 |
| p.(Cys883fs) | CR | de novo | L, H, E, V, F | This study | |
| 14 | Ex 22 |
| p.(Gln884fs) | CR | de novo | L, H, E, F | This study | |
| 15 | Ex 23 | c.2753delT | p.(Ile918fs) | CR | NM | L, H, E, F | Jurkiewicz et al. ( | |
| 16 | Ex 25 |
| p.(Thr1066fs) | CR-TM | ND | L, H, E, V?, F, R | This study | |
| 17 | Ex 26 |
| p.(Leu1077fs) | TM | ND | L, H, E, V, F | This study | |
| Nonsense | 18 | Ex 2 | c.142G>T | p.(Glu48Ter) | SP-DSL | paternal | L, H, E, F | Jurkiewicz et al. ( |
| 19 | Ex 2 |
| p.(Tyr82Ter) | SP-DSL | paternal | L, H, E, V, F | This study | |
| 20 | Ex 2 | c.383G>A | p.(Trp128Ter) | SP-DSL | de novo | L, H, F | Jurkiewicz et al. ( | |
| 21 | Ex 4 | c.496C>T | p.(Gln166Ter) | SP-DSL | de novo | L, V, F | Jurkiewicz et al. ( | |
| 22 | Ex 5 | c.703C>T | p.(Arg235Ter) | EGF1 | de novo | L, H, E, V, F | This studyg | |
| 23 | Ex 6 | c.841C>T | p.(Gln281Ter) | EGF2 | paternal | L, H, E, V, F | Jurkiewicz et al. ( | |
| 24 | Ex 9 | c.1207C>T | p.(Gln403Ter) | EGF5 | de novo | L, H, F | Jurkiewicz et al. ( | |
| 25 | Ex 10 |
| p.(Trp442Ter) | EGF6 | maternal | L, H, E, V, F | This studyg | |
| 26 | Ex 13 | c.1603C>T | p.(Gln535Ter) | EGF9 | de novo | L, H, E, F | Jurkiewicz et al. ( | |
| 27 | Ex 18 | c.2230C>T | p.(Arg744Ter) | EGF14 | de novo | L, H, E, V, F | This study | |
| 28 | Ex 18 |
| p.(Cys768Ter) | EGF14 | maternal | L, V, F | This study | |
| Splice site | 29 | IVS 2 | c.388-1G>C | r.spl? | SP-DSL | de novo | L, H, E, F | Jurkiewicz et al. ( |
| 30 | IVS 3 | c.439 + 1G>A | r.spl? | SP-DSL | maternal | L, H, E, V, F | Jurkiewicz et al. ( | |
| 31 | IVS 3 | c.439 + 1G>A | r.spl? | SP-DSL | de novo | L, H, E, F, R | Jurkiewicz et al. ( | |
| 32 | IVS 5 | c.755 + 1G>A | r.spl? | EGF1 | maternal | L, H, E, V, F | Giannakudis et al. ( | |
| 33 | IVS 6 |
| r.(spl?) | EGF2 | maternal | L, H, E?, V?, F | This study | |
| 34 | IVS 10 |
| r.spl? | EGF6 | ND | L, E, F | This study | |
| 35 | IVS 11 | c.1395 + 3A>G | r.(spl?) | EGF7 | de novo | L, H, E, F | Jurkiewicz et al. ( | |
| 36 | IVS 24 | c.3048 + 1_3048 + 2insG | r.(spl?) | CR-TM | de novo | L, H, E, V, F, R | Jurkiewicz et al. ( | |
| 37 | IVS 24 | c.3048 + 5_3048 + 7delGTA | r.(spl?) | CR-TM | maternal | L, H, E, V, F, R | Röpke et al. ( | |
| Missense | 38 e | Ex 2 | c.359T>A | p.(Ile120Asn) | SP-DSL | maternal | L, H, E, V, F | Jurkiewicz et al. ( |
| 39 e | Ex 2 | c.359T>A | p.(Ile120Asn) | SP-DSL | maternal | L, H, E, F | Jurkiewicz et al. ( | |
| 40 | Ex 4 | c.551G>A | p.(Arg184His) | SP-DSL | paternal | L, E, F, R | Giannakudis et al. ( | |
| 41 | Ex 4 | c.551G>A | p.(Arg184His) | SP-DSL | paternal | L, H, E, V, F | Jurkiewicz et al. ( | |
| 42 | Ex 4 | c.560G>A | p.(CysC187Tyr) | DSL | NM | L, E, V, F | Jurkiewicz et al. ( | |
| 43 | Ex 4 | c.672G>T | p.(Trp224Cys) | DSL | de novo | L, H, F | Röpke et al. ( | |
| 44 | Ex 9 | c.1156G>A | p.(Gly386Arg) | EGF5 | ND | L, H, V, F | This study | |
| 45 | Ex 9 | c.1156G>A | p.(Gly386Arg) | EGF5 | de novo | L, H, E, F | This study | |
| 46 | Ex 10 |
| p.(Asn429Thr) | EGF6 | maternal | L, H, E, F | This study | |
| 47 | Ex 10 |
| p.(Cys438Gly) | EGF6 | maternal | L, H, E, F | This study | |
| Large genomic rearrangements | 48 | Ex 20–23 | c.2889-?_3376+?del | EGF15 – CR | de novo | L, H, E, V, F, R | This studyg | |
| 49 | Ex 3–25 | c.916-?_3999 + ?del | SP-DSL –CR-TM | ND | L, H, E, V, F, R | This studyg | ||
| 50 | Ex 1–25 | 53.9 kb deletion, breakpoints: 10,570,644-10,624,536 | gene deletion | SP – CR-TM | de novo | L, H, E, F, R | This studyg | |
| 51 | Whole gene | 991 kb deletion, breakpoints: 9,818,619–10,810,007 | gene deletion | all | de novo | L, H, E, F | This study | |
| 52 | Whole gene | 2.26 Mb deletion, breakpoints: 9,272,721–11,534,825 | gene deletion | all | de novo | L, H, F, R | This study | |
| 53e | Whole gene | 5.4 Mb deletion, breakpoints: 9,323,011–14,733,354 | gene deletion | all | paternal | L, H, E, V, F, R | This studyg | |
| 54e | Whole gene | 5.4 Mb deletion, breakpoints: 9,323,011–14,733,354 | gene deletion | all | paternal | L, H, E, V, F | This studyg | |
| 55f | Whole gene | 5.4 Mb deletion, breakpoints: 9,323,011–14,733,354 | gene deletion | all | ND | L, H, E, V, F, R | This studyg | |
| 56 | Whole gene | paracentric inversion of chromosome 20p12.2p13, insertion breakpoint between exons 5 and 6 of | EGF1 | de novo | L, H, E, F | Stankiewicz et al. ( |
athe JAG1 sequence is that of the cDNA of the GenBank accession no. NM_000214.2; the nucleotide position at the A of the ATG translation start codon is denoted as nucleotide +1; novel point mutations appear in boldface print; chromosomal coordinates are given according to the GRCh37/hg19 assembly
bSP-DSL – region between signal peptide and DSL domain, DSL – Delta/Serrate/Lag2 domain, EGF – epidermal growth factor repeats domain, CR – cysteine-rich region, CM-TM – region between CR and TM, TM – transmembrane domain
c ND – not determined, parent’s samples not available; NM – mutation not detected in mother’s sample, father’s sample not available
dmain ALGS symptoms: L – liver, H – heart, E – eye, V – vertebrae, F – face, R – renal involvement, ? – the feature was not examined
esiblings
fcousin of the siblings no. 53, 54
gpatients from previous studies eveluated again in this study
Fig. 1Distribution of JAG1 mutations in ALGS patients. a: Polish cohort. b: Other reported populations
Fig. 2Diagram of proposed genetic investigations for suspected Polish ALGS patients