Literature DB >> 24743996

A description of the Molecular Signatures Database (MSigDB) Web site.

Arthur Liberzon1.   

Abstract

Annotated lists of genes help researchers to prioritize their own lists of candidate genes and to plan follow-up studies. The Molecular Signatures Database (MSigDB) is one of the most widely used knowledge base repositories of annotated sets of genes involved in biochemical pathways, signaling cascades, expression profiles from research publications, and other biological concepts. Here we provide an overview of MSigDB and its online analytical tools.

Mesh：

Year:  2014        PMID： 24743996     DOI： 10.1007/978-1-4939-0512-6_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  94 in total

1.  Comprehensive profiling of biological processes reveals two major prognostic subtypes in breast cancer.

Authors:  Fei Chen; Sheng Gao; Fengliang Wang; Jingjing Ma; Min Zhang; Mingming Lv; Qian Zhou; Ziyi Fu; Cheng Lu; Hong Yin
Journal:  Tumour Biol       Date:  2015-10-07

2.  Hepatic FOXO1 Target Genes Are Co-regulated by Thyroid Hormone via RICTOR Protein Deacetylation and MTORC2-AKT Protein Inhibition.

Authors:  Brijesh K Singh; Rohit A Sinha; Jin Zhou; Madhulika Tripathi; Kenji Ohba; Mu-En Wang; Inna Astapova; Sujoy Ghosh; Anthony N Hollenberg; Karine Gauthier; Paul M Yen
Journal:  J Biol Chem       Date:  2015-10-09       Impact factor: 5.157

3.  Study of genetic correlation between children's sleep and obesity.

Authors:  Hao Mei; Fan Jiang; Lianna Li; Michael Griswold; Shijian Liu; Thomas Mosley
Journal:  J Hum Genet       Date:  2020-06-18       Impact factor: 3.172

4.  T Cell-Expressed microRNA-155 Reduces Lifespan in a Mouse Model of Age-Related Chronic Inflammation.

Authors:  H Atakan Ekiz; Andrew G Ramstead; Soh-Hyun Lee; Morgan C Nelson; Kaylyn M Bauer; Jared A Wallace; Ruozhen Hu; June L Round; Jared Rutter; Micah J Drummond; Dinesh S Rao; Ryan M O'Connell
Journal:  J Immunol       Date:  2020-03-11       Impact factor: 5.422

Review 5.  Vaccinology in the era of high-throughput biology.

Authors:  Helder I Nakaya; Bali Pulendran
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-06-19       Impact factor: 6.237

6.  gsSKAT: Rapid gene set analysis and multiple testing correction for rare-variant association studies using weighted linear kernels.

Authors:  Nicholas B Larson; Shannon McDonnell; Lisa Cannon Albright; Craig Teerlink; Janet Stanford; Elaine A Ostrander; William B Isaacs; Jianfeng Xu; Kathleen A Cooney; Ethan Lange; Johanna Schleutker; John D Carpten; Isaac Powell; Joan E Bailey-Wilson; Olivier Cussenot; Geraldine Cancel-Tassin; Graham G Giles; Robert J MacInnis; Christiane Maier; Alice S Whittemore; Chih-Lin Hsieh; Fredrik Wiklund; William J Catalona; William Foulkes; Diptasri Mandal; Rosalind Eeles; Zsofia Kote-Jarai; Michael J Ackerman; Timothy M Olson; Christopher J Klein; Stephen N Thibodeau; Daniel J Schaid
Journal:  Genet Epidemiol       Date:  2017-02-16       Impact factor: 2.135

7.  Transcriptional and Cell Cycle Alterations Mark Aging of Primary Human Adipose-Derived Stem Cells.

Authors:  Xiaoyin Shan; Cleresa Roberts; Eun Ji Kim; Ariana Brenner; Gregory Grant; Ivona Percec
Journal:  Stem Cells       Date:  2017-03-05       Impact factor: 6.277

8.  Genome-Wide Analysis of c-MYC-Regulated mRNAs and miRNAs and c-MYC DNA-Binding by Next-Generation Sequencing.

Authors:  Rene Jackstadt; Markus Kaller; Antje Menssen; Heiko Hermeking
Journal:  Methods Mol Biol       Date:  2021

9.  Multi-omics analysis of primary glioblastoma cell lines shows recapitulation of pivotal molecular features of parental tumors.

Authors:  Shai Rosenberg; Maïté Verreault; Charlotte Schmitt; Justine Guegan; Jeremy Guehennec; Camille Levasseur; Yannick Marie; Franck Bielle; Karima Mokhtari; Khê Hoang-Xuan; Keith Ligon; Marc Sanson; Jean-Yves Delattre; Ahmed Idbaih
Journal:  Neuro Oncol       Date:  2017-02-01       Impact factor: 12.300

10.  Bile acid analogues are activators of pyrin inflammasome.

Authors:  Irina Alimov; Suchithra Menon; Nadire Cochran; Rob Maher; Qiong Wang; John Alford; John B Concannon; Zinger Yang; Edmund Harrington; Luis Llamas; Alicia Lindeman; Gregory Hoffman; Tim Schuhmann; Carsten Russ; John Reece-Hoyes; Stephen M Canham; Xinming Cai
Journal:  J Biol Chem       Date:  2019-01-15       Impact factor: 5.157
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