| Literature DB >> 24741566 |
Michael Schneider1, Anne Engel1, Peter A Fasching1, Lothar Häberle1, Elisabeth B Binder2, Franziska Voigt3, Jennifer Grimm4, Florian Faschingbauer1, Anna Eichler4, Ulf Dammer1, Dirk Rebhan1, Manuela Amann1, Eva Raabe1, Tamme W Goecke3, Carina Quast2, Matthias W Beckmann1, Johannes Kornhuber5, Anna Seifert2, Stefanie Burghaus1.
Abstract
PURPOSE: The aim of this study was to investigate whether single nucleotide polymorphisms (SNPs) in genes of the stress hormone signaling pathway, specifically FKBP5, NR3C1, and CRHR1, are associated with depressive symptoms during and after pregnancy.Entities:
Mesh:
Substances:
Year: 2014 PMID: 24741566 PMCID: PMC3972848 DOI: 10.1155/2014/469278
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Genotype and allele distribution for each single nucleotide polymorphism (SNP). Absolute frequencies and percentages (in brackets) are shown.
| SNP | Chrom.1 | Position | Alleles2 | MAF3 (%) | Homozygous, common4 | Heterozygous4 | Homozygous rare4 |
|---|---|---|---|---|---|---|---|
| rs1360780 (FKBP5) | 6 | 35607571 | C/T | 32.0 | 168 (46.5) | 155 (43.2) | 38 (10.5) |
| rs9296158 (FKBP5) | 6 | 35567082 | G/A | 32.0 | 166 (46.1) | 156 (43.3) | 37 (10.2) |
| rs3800373 (FKBP5) | 6 | 35542476 | T/G | 28.4 | 185 (51.8) | 147 (40.7) | 29 (8.0) |
| rs9470080 (FKBP5) | 6 | 35646435 | C/T | 34.7 | 155 (42.9) | 160 (44.6) | 45 (12.5) |
| rs41423247 (NR3C1) | 5 | 142778575 | G/C | 34.7 | 156 (43.3) | 158 (43.9) | 46 (12.7) |
| rs6195 (NR3C1) | 5 | 142779317 | A/G | 4.7 | 327 (91.6) | 34 (9.4) | 0 (0.0) |
| rs10482605 (NR3C1) | 5 | 142783521 | T/C | 18.3 | 242 (67.0) | 99 (27.6) | 16 (4.4) |
| rs110402 (CRHR1) | 17 | 43880047 | C/T | 45.3 | 110 (30.6) | 175 (48.6) | 76 (21.1) |
| rs7209436 (CRHR1) | 17 | 43870142 | C/T | 44.0 | 115 (32.2) | 174 (48.2) | 72 (19.9) |
1Chromosome; 2major/minor allele, based on the forward strand and minor allele frequency; 3minor allele frequency; 4frequency, percentage in brackets.
Reconstructed haplotypes for each gene and absolute frequencies and percentages (in brackets).
| No | Gene | SNP | Haplotype | Haplotype frequency | ||
|---|---|---|---|---|---|---|
| 0 | 1 | 2 | ||||
| 1 | FKBP5 | 1–4 | CGTC | 46 (12.74%) | 163 (45.15%) | 152 (42.11%) |
| 2 | CGTT | 341 (94.46%) | 19 (5.26%) | 1 (0.28%) | ||
| 3 | CATC | 360 (99.72%) | 1 (0.28%) | 0 (0.00%) | ||
| 4 | CATT | 360 (99.72%) | 1 (0.28%) | 0 (0.00%) | ||
| 5 | CAGC | 360 (99.72%) | 1 (0.28%) | 0 (0.00%) | ||
| 6 | TGTT | 358 (99.17%) | 3 (0.38%) | 0 (0.00%) | ||
| 7 | TATC | 359 (99.45%) | 2 (0.55%) | 0 (0.00%) | ||
| 8 | TATT | 339 (93.91%) | 22 (6.09%) | 0 (0.00%) | ||
| 9 | TAGC | 360 (99.72%) | 1 (0.28%) | 0 (0.00%) | ||
| 10 | TAGT | 187 (51.80%) | 145 (40.17%) | 29 (8.03%) | ||
|
| ||||||
| 11 | GR-NR3C1 | 5–7 | GAT | 118 (32.69%) | 178 (49.31%) | 65 (18.01%) |
| 12 | GAC | 247 (68.42%) | 99 (27.42%) | 15 (4.16%) | ||
| 13 | GGT | 327 (90.58%) | 33 (9.14%) | 1 (0.28%) | ||
| 14 | CAT | 158 (43.77%) | 158 (43.77%) | 45 (12.47%) | ||
| 15 | CAC | 359 (99.45%) | 2 (0.55%) | 0 (0.00%) | ||
|
| ||||||
| 16 | CRHR1 | 8+9 | CC | 76 (21.05%) | 175 (48.48%) | 110 (30.47%) |
| 17 | TC | 352 (97.51%) | 9 (2.49%) | 0 (0.00%) | ||
| 18 | TT | 115 (31.86%) | 174 (48.20%) | 72 (19.94%) | ||
Figure 1Mean EPDS values of FKBP5 haplotype CGTC with 95% confidence intervals.
Figure 2Mean EPDS values of GRNR3C1 haplotype GAT with 95% confidence intervals.
Figure 3Mean EPDS values of CRHR1 haplotype CC with 95% confidence intervals.