Literature DB >> 24736159

An ensemble approach to the evolution of complex systems.

Göker Arpağ1, Ayşe Erzan.   

Abstract

Adaptive systems frequently incorporate complex structures which can arise spontaneously and which may be nonadaptive in the evolutionary sense. We give examples from phase transition and fractal growth to develop the themes of cooperative phenomena and pattern formation. We discuss RNA interference and transcriptional gene regulation networks, where a major part of the topological properties can be accounted for by mere combinatorics. A discussion of ensemble approaches to biological systems and measures of complexity is presented, and a connection is established between complexity and fitness.

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Year:  2014        PMID: 24736159     DOI: 10.1007/s12038-013-9394-8

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  48 in total

1.  Functional anatomy of a dsRNA trigger: differential requirement for the two trigger strands in RNA interference.

Authors:  S Parrish; J Fleenor; S Xu; C Mello; A Fire
Journal:  Mol Cell       Date:  2000-11       Impact factor: 17.970

Review 2.  RNA interference.

Authors:  Gregory J Hannon
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 3.  Network biology: understanding the cell's functional organization.

Authors:  Albert-László Barabási; Zoltán N Oltvai
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

Review 4.  The evolution of gene regulation by transcription factors and microRNAs.

Authors:  Kevin Chen; Nikolaus Rajewsky
Journal:  Nat Rev Genet       Date:  2007-02       Impact factor: 53.242

Review 5.  The evolution of genetic networks by non-adaptive processes.

Authors:  Michael Lynch
Journal:  Nat Rev Genet       Date:  2007-10       Impact factor: 53.242

Review 6.  Principles of protein-protein interactions: what are the preferred ways for proteins to interact?

Authors:  Ozlem Keskin; Attila Gursoy; Buyong Ma; Ruth Nussinov
Journal:  Chem Rev       Date:  2008-03-21       Impact factor: 60.622

Review 7.  The remarkable discreteness of being.

Authors:  Bahram Houchmandzadeh
Journal:  J Biosci       Date:  2014-04       Impact factor: 1.826

8.  The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme.

Authors:  S J Gould; R C Lewontin
Journal:  Proc R Soc Lond B Biol Sci       Date:  1979-09-21

9.  Scaling features of noncoding DNA.

Authors:  H E Stanley; S V Buldyrev; A L Goldberger; S Havlin; C K Peng; M Simons
Journal:  Physica A       Date:  1999       Impact factor: 3.263

10.  Virus-specific host miRNAs: antiviral defenses or promoters of persistent infection?

Authors:  Vinay S Mahajan; Adam Drake; Jianzhu Chen
Journal:  Trends Immunol       Date:  2008-12-06       Impact factor: 16.687

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  1 in total

1.  Group behaviour in physical, chemical and biological systems.

Authors:  Cihan Saçlioğlu; Önder Pekcan; Vidyanand Nanjundiah
Journal:  J Biosci       Date:  2014-04       Impact factor: 1.826

  1 in total

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