Literature DB >> 24729830

Semi-supervised clustering methods.

Eric Bair1.   

Abstract

Cluster analysis methods seek to partition a data set into homogeneous subgroups. It is useful in a wide variety of applications, including document processing and modern genetics. Conventional clustering methods are unsupervised, meaning that there is no outcome variable nor is anything known about the relationship between the observations in the data set. In many situations, however, information about the clusters is available in addition to the values of the features. For example, the cluster labels of some observations may be known, or certain observations may be known to belong to the same cluster. In other cases, one may wish to identify clusters that are associated with a particular outcome variable. This review describes several clustering algorithms (known as "semi-supervised clustering" methods) that can be applied in these situations. The majority of these methods are modifications of the popular k-means clustering method, and several of them will be described in detail. A brief description of some other semi-supervised clustering algorithms is also provided.

Entities:  

Keywords:  cluster analysis; high-dimensional data; machine learning; semi-supervised methods

Year:  2013        PMID: 24729830      PMCID: PMC3979639          DOI: 10.1002/wics.1270

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Comput Stat        ISSN: 1939-0068


  17 in total

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3.  Knowledge guided analysis of microarray data.

Authors:  Zhuo Fang; Jiong Yang; Yixue Li; Qingming Luo; Lei Liu
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4.  Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data.

Authors:  Desheng Huang; Wei Pan
Journal:  Bioinformatics       Date:  2006-02-24       Impact factor: 6.937

5.  Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps.

Authors:  Markus Brameier; Carsten Wiuf
Journal:  J Biomed Inform       Date:  2006-05-20       Impact factor: 6.317

6.  Semi-supervised recursively partitioned mixture models for identifying cancer subtypes.

Authors:  Devin C Koestler; Carmen J Marsit; Brock C Christensen; Margaret R Karagas; Raphael Bueno; David J Sugarbaker; Karl T Kelsey; E Andres Houseman
Journal:  Bioinformatics       Date:  2010-08-16       Impact factor: 6.937

7.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

8.  Complementary hierarchical clustering.

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Journal:  Biostatistics       Date:  2007-12-18       Impact factor: 5.899

9.  Semi-supervised methods to predict patient survival from gene expression data.

Authors:  Eric Bair; Robert Tibshirani
Journal:  PLoS Biol       Date:  2004-04-13       Impact factor: 8.029

10.  Microarray data mining using landmark gene-guided clustering.

Authors:  Pankaj Chopra; Jaewoo Kang; Jiong Yang; HyungJun Cho; Heenam Stanley Kim; Min-Goo Lee
Journal:  BMC Bioinformatics       Date:  2008-02-11       Impact factor: 3.169

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  10 in total

1.  Identification of relevant subtypes via preweighted sparse clustering.

Authors:  Sheila Gaynor; Eric Bair
Journal:  Comput Stat Data Anal       Date:  2017-06-23       Impact factor: 1.681

2.  Kidney Transplant Rejection Clusters and Graft Outcomes: Revisiting Banff in the Era of "Big Data".

Authors:  George Vasquez-Rios; Madhav C Menon
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Review 3.  No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects.

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4.  Association of Chronic Condition Special Needs Plan With Hospitalization and Mortality Among Patients With End-Stage Kidney Disease.

Authors:  Bryan N Becker; Jiacong Luo; Kathryn S Gray; Carey Colson; Dena E Cohen; Stephen McMurray; Bryan Gregory; Nathan Lohmeyer; Steven M Brunelli
Journal:  JAMA Netw Open       Date:  2020-11-02

5.  Brain Asymmetry Detection and Machine Learning Classification for Diagnosis of Early Dementia.

Authors:  Nitsa J Herzog; George D Magoulas
Journal:  Sensors (Basel)       Date:  2021-01-24       Impact factor: 3.576

6.  Trajectories of imitation skills in preschoolers with autism spectrum disorders.

Authors:  Irène Pittet; Nada Kojovic; Martina Franchini; Marie Schaer
Journal:  J Neurodev Disord       Date:  2022-01-05       Impact factor: 4.025

7.  Development of Structural Covariance From Childhood to Adolescence: A Longitudinal Study in 22q11.2DS.

Authors:  Corrado Sandini; Daniela Zöller; Elisa Scariati; Maria C Padula; Maude Schneider; Marie Schaer; Dimitri Van De Ville; Stephan Eliez
Journal:  Front Neurosci       Date:  2018-05-18       Impact factor: 4.677

Review 8.  Challenges of Clustering Multimodal Clinical Data: Review of Applications in Asthma Subtyping.

Authors:  Elsie Horne; Holly Tibble; Aziz Sheikh; Athanasios Tsanas
Journal:  JMIR Med Inform       Date:  2020-05-28

9.  Cross-Cultural Validation of Mood Profile Clusters in a Sport and Exercise Context.

Authors:  Alessandro Quartiroli; Renée L Parsons-Smith; Gerard J Fogarty; Garry Kuan; Peter C Terry
Journal:  Front Psychol       Date:  2018-10-09

10.  Characterizing the weight-glycemia phenotypes of type 1 diabetes in youth and young adulthood.

Authors:  Michael R Kosorok; Elizabeth J Mayer-Davis; Anna R Kahkoska; Crystal T Nguyen; Xiaotong Jiang; Linda A Adair; Shivani Agarwal; Allison E Aiello; Kyle S Burger; John B Buse; Dana Dabelea; Lawrence M Dolan; Giuseppina Imperatore; Jean Marie Lawrence; Santica Marcovina; Catherine Pihoker; Beth A Reboussin; Katherine A Sauder
Journal:  BMJ Open Diabetes Res Care       Date:  2020-01
  10 in total

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