Literature DB >> 24724171

Addendum: Digestion and depletion of abundant proteins improves proteomic coverage.

Bryan R Fonslow, Benjamin D Stein, Kristofor J Webb, Tao Xu, Jeong Choi, Sung Kyu Park, John R Yates.   

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Year:  2014        PMID： 24724171      PMCID： PMC4408018          DOI： 10.1038/nmeth0314-347

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  8 in total

1.  A model for random sampling and estimation of relative protein abundance in shotgun proteomics.

Authors:  Hongbin Liu; Rovshan G Sadygov; John R Yates
Journal:  Anal Chem       Date:  2004-07-15       Impact factor: 6.986

2.  Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae.

Authors:  Boris Zybailov; Amber L Mosley; Mihaela E Sardiu; Michael K Coleman; Laurence Florens; Michael P Washburn
Journal:  J Proteome Res       Date:  2006-09       Impact factor: 4.466

3.  An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets.

Authors:  Daniel Schwartz; Steven P Gygi
Journal:  Nat Biotechnol       Date:  2005-11       Impact factor: 54.908

Review 4.  Scoring proteomes with proteotypic peptide probes.

Authors:  Bernhard Kuster; Markus Schirle; Parag Mallick; Ruedi Aebersold
Journal:  Nat Rev Mol Cell Biol       Date:  2005-07       Impact factor: 94.444

5.  A quantitative analysis software tool for mass spectrometry-based proteomics.

Authors:  Sung Kyu Park; John D Venable; Tao Xu; John R Yates
Journal:  Nat Methods       Date:  2008-03-16       Impact factor: 28.547

6.  Improved visualization of protein consensus sequences by iceLogo.

Authors:  Niklaas Colaert; Kenny Helsens; Lennart Martens; Joël Vandekerckhove; Kris Gevaert
Journal:  Nat Methods       Date:  2009-11       Impact factor: 28.547

7.  Global quantification of mammalian gene expression control.

Authors:  Björn Schwanhäusser; Dorothea Busse; Na Li; Gunnar Dittmar; Johannes Schuchhardt; Jana Wolf; Wei Chen; Matthias Selbach
Journal:  Nature       Date:  2011-05-19       Impact factor: 49.962

8.  Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis.

Authors:  Noelle M Griffin; Jingyi Yu; Fred Long; Phil Oh; Sabrina Shore; Yan Li; Jim A Koziol; Jan E Schnitzer
Journal:  Nat Biotechnol       Date:  2009-12-13       Impact factor: 54.908
  8 in total
  3 in total

1.  Protein digestion priority is independent of protein abundances.

Authors:  Mingliang Ye; Yanbo Pan; Kai Cheng; Hanfa Zou
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

2.  Accuracy and Reproducibility in Quantification of Plasma Protein Concentrations by Mass Spectrometry without the Use of Isotopic Standards.

Authors:  Gertjan Kramer; Yvonne Woolerton; Jan P van Straalen; Johannes P C Vissers; Nick Dekker; James I Langridge; Robert J Beynon; Dave Speijer; Auguste Sturk; Johannes M F G Aerts
Journal:  PLoS One       Date:  2015-10-16       Impact factor: 3.240

3.  Proteomics of Skeletal Muscle: Focus on Insulin Resistance and Exercise Biology.

Authors:  Atul S Deshmukh
Journal:  Proteomes       Date:  2016-02-04
  3 in total

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