Literature DB >> 19876014

Improved visualization of protein consensus sequences by iceLogo.

Niklaas Colaert, Kenny Helsens, Lennart Martens, Joël Vandekerckhove, Kris Gevaert.   

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Year:  2009        PMID： 19876014     DOI： 10.1038/nmeth1109-786

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

1.  WebLogo: a sequence logo generator.

Authors:  Gavin E Crooks; Gary Hon; John-Marc Chandonia; Steven E Brenner
Journal:  Genome Res       Date:  2004-06       Impact factor: 9.043

2.  Analysis of protein processing by N-terminal proteomics reveals novel species-specific substrate determinants of granzyme B orthologs.

Authors:  Petra Van Damme; Sebastian Maurer-Stroh; Kim Plasman; Joost Van Durme; Niklaas Colaert; Evy Timmerman; Pieter-Jan De Bock; Marc Goethals; Frederic Rousseau; Joost Schymkowitz; Joël Vandekerckhove; Kris Gevaert
Journal:  Mol Cell Proteomics       Date:  2008-10-03       Impact factor: 5.911

3.  Sequence logos: a new way to display consensus sequences.

Authors:  T D Schneider; R M Stephens
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

4.  Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans.

Authors:  Thomas Arnesen; Petra Van Damme; Bogdan Polevoda; Kenny Helsens; Rune Evjenth; Niklaas Colaert; Jan Erik Varhaug; Joël Vandekerckhove; Johan R Lillehaug; Fred Sherman; Kris Gevaert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-06       Impact factor: 11.205

5.  The 20 years of PROSITE.

Authors:  Nicolas Hulo; Amos Bairoch; Virginie Bulliard; Lorenzo Cerutti; Béatrice A Cuche; Edouard de Castro; Corinne Lachaize; Petra S Langendijk-Genevaux; Christian J A Sigrist
Journal:  Nucleic Acids Res       Date:  2007-11-14       Impact factor: 16.971

6.  AAindex: amino acid index database, progress report 2008.

Authors:  Shuichi Kawashima; Piotr Pokarowski; Maria Pokarowska; Andrzej Kolinski; Toshiaki Katayama; Minoru Kanehisa
Journal:  Nucleic Acids Res       Date:  2007-11-12       Impact factor: 16.971
  6 in total
  311 in total

1.  Type 1 diabetes-associated HLA-DQ8 transdimer accommodates a unique peptide repertoire.

Authors:  Menno van Lummel; Peter A van Veelen; Arnaud Zaldumbide; Arnoud de Ru; George M C Janssen; Antonis K Moustakas; George K Papadopoulos; Jan W Drijfhout; Bart O Roep; Frits Koning
Journal:  J Biol Chem       Date:  2011-12-19       Impact factor: 5.157

2.  Characterization of gut-associated cathepsin D hemoglobinase from tick Ixodes ricinus (IrCD1).

Authors:  Daniel Sojka; Zdenek Franta; Helena Frantová; Pavla Bartosová; Martin Horn; Jana Váchová; Anthony J O'Donoghue; Alegra A Eroy-Reveles; Charles S Craik; Giselle M Knudsen; Conor R Caffrey; James H McKerrow; Michael Mares; Petr Kopácek
Journal:  J Biol Chem       Date:  2012-04-26       Impact factor: 5.157

3.  Complementary positional proteomics for screening substrates of endo- and exoproteases.

Authors:  Petra Van Damme; An Staes; Silvia Bronsoms; Kenny Helsens; Niklaas Colaert; Evy Timmerman; Francesc X Aviles; Joël Vandekerckhove; Kris Gevaert
Journal:  Nat Methods       Date:  2010-06-06       Impact factor: 28.547

4.  A quantitative proteomics design for systematic identification of protease cleavage events.

Authors:  Francis Impens; Niklaas Colaert; Kenny Helsens; Bart Ghesquière; Evy Timmerman; Pieter-Jan De Bock; Benjamin M Chain; Joël Vandekerckhove; Kris Gevaert
Journal:  Mol Cell Proteomics       Date:  2010-07-13       Impact factor: 5.911

5.  Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry.

Authors:  Oliver Schilling; Pitter F Huesgen; Olivier Barré; Ulrich Auf dem Keller; Christopher M Overall
Journal:  Nat Protoc       Date:  2011-01-06       Impact factor: 13.491

6.  Interrogating cAMP-dependent kinase signaling in Jurkat T cells via a protein kinase A targeted immune-precipitation phosphoproteomics approach.

Authors:  Piero Giansanti; Matthew P Stokes; Jeffrey C Silva; Arjen Scholten; Albert J R Heck
Journal:  Mol Cell Proteomics       Date:  2013-07-23       Impact factor: 5.911

7.  Large Scale Mass Spectrometry-based Identifications of Enzyme-mediated Protein Methylation Are Subject to High False Discovery Rates.

Authors:  Gene Hart-Smith; Daniel Yagoub; Aidan P Tay; Russell Pickford; Marc R Wilkins
Journal:  Mol Cell Proteomics       Date:  2015-12-23       Impact factor: 5.911

8.  Time-resolved analysis of the matrix metalloproteinase 10 substrate degradome.

Authors:  Pascal Schlage; Fabian E Egli; Paolo Nanni; Lauren W Wang; Jayachandran N Kizhakkedathu; Suneel S Apte; Ulrich auf dem Keller
Journal:  Mol Cell Proteomics       Date:  2013-11-26       Impact factor: 5.911

9.  Revealing Dynamic Protein Acetylation across Subcellular Compartments.

Authors:  Josue Baeza; Alexis J Lawton; Jing Fan; Michael J Smallegan; Ian Lienert; Tejas Gandhi; Oliver M Bernhardt; Lukas Reiter; John M Denu
Journal:  J Proteome Res       Date:  2020-04-27       Impact factor: 4.466

10.  Phosphopeptidomics Reveals Differential Phosphorylation States and Novel SxE Phosphosite Motifs of Neuropeptides in Dense Core Secretory Vesicles.

Authors:  Christopher B Lietz; Thomas Toneff; Charles Mosier; Sonia Podvin; Anthony J O'Donoghue; Vivian Hook
Journal:  J Am Soc Mass Spectrom       Date:  2018-03-19       Impact factor: 3.109
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