| Literature DB >> 24718260 |
Xudong Shi1, Daniel DiRenzo1, Lian-Wang Guo1, Sarah R Franco1, Bowen Wang1, Stephen Seedial1, K Craig Kent1.
Abstract
Atherosclerotic-associated diseases are the leading cause of death in the United States. Despite recent progress, interventional treatments for atherosclerosis can be complicated by restenosis resulting from neo-intimal hyperplasia. We have previously demonstrated that TGF-β and its downstream signaling protein Smad3 ∶ 1) are up-regulated following vascular injury, 2) together drive smooth muscle cell (SMC) proliferation and migration and 3) enhance the development of intimal hyperplasia. In order to determine a mechanism through which TGF-β/Smad3 promote these effects, Affymetrix gene expression arrays were performed on primary rat SMCs infected with Smad3 and stimulated with TGF-β or infected with GFP alone. More than 200 genes were differentially expressed (>2.0 fold change, p<0.05) in TGF-β/Smad3 stimulated SMCs. We then performed GO term enrichment analysis using the DAVID bioinformatics database and found that TGF-β/Smad3 activated the expression of multiple genes related to either development or cell differentiation, several of which have been shown to be associated with multipotent stem or progenitor cells. Quantitative real-time PCR confirmed up-regulation of several developmental genes including FGF1, NGF, and Wnt11 (by 2.5, 6 and 7 fold, respectively) as well as stem/progenitor cell associated genes CD34 and CXCR4 (by 10 and 45 fold, respectively). In addition, up-regulation of these factors at protein levels were also confirmed by Western blotting, or by immunocytochemistry (performed for CXCR4 and NGF). Finally, TGF-β/Smad3 down regulated transcription of SMC contractile genes as well as protein production of smooth muscle alpha actin, calponin, and smooth muscle myosin heavy chain. These combined results suggest that TGF-β/Smad3 stimulation drives SMCs to a phenotypically altered state of de-differentiation through the up-regulation of developmental related genes.Entities:
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Year: 2014 PMID: 24718260 PMCID: PMC3981734 DOI: 10.1371/journal.pone.0093995
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1TGF-β/Smad3 treatment significantly affects gene expression in vascular SMCs.
Cultured rat vascular SMCs were infected with an adenovirus expressing Smad3 (AdSmad3) and treated with TGF-β (5 ng/ml) for 24 h. Adenovirus expressing GFP (AdGFP) was used as a control. Gene expression was analyzed by microarray (n = 3). A. Heat map shows regulated genes that are more than 2-fold and significantly increased or decreased after TGF-β/Smad3 treatment. Color encoded relative gene expression levels are expressed in log2 scale. Blue represents genes with lower expression level whereas red represents genes with higher expression (see legend). B. Dot plot overview of up and down regulated genes after TGF-β/AdSmad3 treatment are compared to AdGFP control. Green lines represent unchanged (middle), 2-fold up-regulated (upper-left) or 2-fold down-regulated (lower right) genes. Red dots represent genes that are significantly different from control (P<0.05) and yellow dots represent genes that are not.
Figure 2Functional role of TGF-β/Smad3 regulated genes.
Significantly regulated genes after AdSmad3/TGF-β treatment (>2-fold change and P<0.05) were submitted to David Bioinformatics Resources 6.7 (NIH, NIAID) for functional analysis. TGF-β/Smad3 regulated genes are associated with multiple functions based upon clustering annotation measured by Fisher Exact in the DAVID system. The enrichment scores represent the relative importance of the function of each the regulated genes. An enrichment score of 1.3 is similar to P<0.05.
De-differentiation Genes.
| Gene Symbol | DAVID Name | Fold Change | p-value |
| Cxcl12 | chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) | −2.79 | 0.045 |
| Cxcr4 | chemokine (C-X-C motif) receptor 4 | 4.16 | 0.017 |
| Chrdl2 | chordin-like 2 | 9.77 | 0.034 |
| Enpp1 | ectonucleotide pyrophosphatase/phosphodiesterase 1 | 2.63 | 0.045 |
| Fgf1 | fibroblast growth factor 1 | 5.00 | 0.017 |
| Foxq1 | forkhead box Q1 | 2.25 | 0.049 |
| Fstl3 | follistatin-like 3 (secreted glycoprotein) | 3.43 | 0.042 |
| Grem1 | gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis) | −2.33 | 0.043 |
| Hbegf | heparin-binding EGF-like growth factor | 2.80 | 0.046 |
| Id2 | inhibitor of DNA binding 2 | −2.25 | 0.042 |
| Pde3b | phosphodiesterase 3B, cGMP-inhibited | −2.54 | 0.007 |
| Ptgs2 | prostaglandin-endoperoxide synthase 2 | 2.62 | 0.043 |
| Pthlh | parathyroid hormone-like hormone | 3.02 | 0.015 |
| Sox18 | SRY (sex determining region Y)-box 18 | 3.19 | 0.020 |
| Terf1 | telomeric repeat binding factor (NIMA-interacting) 1 | −2.13 | 0.045 |
| Wnt2b | wingless-type MMTV integration site family, member 2B | 17.02 | 0.008 |
| Wnt9a | wingless-type MMTV integration site family, member 9A | 3.95 | 0.029 |
Differentiation Genes.
| Gene Symbol | DAVID Name | Fold Change | p-value |
| Ada | adenosine deaminase | 4.96 | 0.030 |
| Amtn | Amelotin | 68.06 | 0.012 |
| Ass1 | argininosuccinate synthetase 1 | 23.98 | 0.013 |
| Bcl2 | B-cell CLL/lymphoma 2 | −3.18 | 0.030 |
| Capn5 | calpain 5 | −2.04 | 0.042 |
| Cdkn2b | cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) | 3.21 | 0.023 |
| Chrnb1 | cholinergic receptor, nicotinic, beta 1 (muscle) | 2.51 | 0.029 |
| Col4a1 | collagen, type IV, alpha 1 | 2.11 | 0.047 |
| Csrp2 | cysteine and glycine-rich protein 2 | 3.10 | 0.022 |
| Dgkg | diacylglycerol kinase, gamma | −2.05 | 0.035 |
| Ercc1 | excision repair cross-complementing rodent repair deficiency, complementation group 1 | 2.26 | 0.021 |
| Fnbp1 | formin binding protein 1 | −2.20 | 0.032 |
| Gal | galanin prepropeptide | 24.49 | 0.013 |
| Hells | helicase, lymphoid specific | 3.14 | 0.028 |
| Ifi204 | interferon activated gene 204 | −2.93 | 0.024 |
| Lrp8 | low density lipoprotein receptor-related protein 8, apolipoprotein e receptor | 2.11 | 0.021 |
| Mdga1 | MAM domain containing glycosylphosphatidylinositol anchor 1 | 3.66 | 0.012 |
| Meox2 | mesenchyme homeobox 2 | −3.40 | 0.034 |
| Mustn1 | musculoskeletal, embryonic nuclear protein 1 | −3.12 | 0.019 |
| Myo1e | myosin IE | 2.04 | 0.022 |
| Nfib | nuclear factor I/B | −2.10 | 0.029 |
| Ngf | nerve growth factor (beta polypeptide) | 3.33 | 0.019 |
| Plaur | plasminogen activator, urokinase receptor | 2.23 | 0.021 |
| Plxna2 | plexin A2 | 3.96 | 0.016 |
| Plxna4a | plexin A4, A | 3.68 | 0.045 |
| Ppap2b | phosphatidic acid phosphatase type 2B | −5.72 | 0.022 |
| Prdm1 | PR domain containing 1, with ZNF domain | 2.47 | 0.028 |
| Selenbp1 | selenium binding protein 1 | −6.38 | 0.035 |
| Sept4 | septin 4 | −2.26 | 0.032 |
| Smpd3 | sphingomyelin phosphodiesterase 3, neutral | −3.44 | 0.017 |
| Tgfb1 | transforming growth factor, beta 1 | 2.00 | 0.025 |
| Unc5c | unc-5 homolog C (C. elegans) | −2.07 | 0.028 |
| Wnt11 | wingless-type MMTV integration site family, member 11 | 3.82 | 0.018 |
| Wnt5a | wingless-type MMTV integration site family, member 5A | 4.55 | 0.033 |
| Gene Symbol | DAVID Name | Fold Change | p-value |
| Ada | adenosine deaminase | 4.96 | 0.030 |
| Amtn | Amelotin | 68.06 | 0.012 |
| Ass1 | argininosuccinate synthetase 1 | 23.98 | 0.013 |
| Bcl2 | B-cell CLL/lymphoma 2 | −3.18 | 0.030 |
| Capn5 | calpain 5 | −2.04 | 0.042 |
| Cdkn2b | cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) | 3.21 | 0.023 |
| Chrnb1 | cholinergic receptor, nicotinic, beta 1 (muscle) | 2.51 | 0.029 |
| Col4a1 | collagen, type IV, alpha 1 | 2.11 | 0.047 |
| Csrp2 | cysteine and glycine-rich protein 2 | 3.10 | 0.022 |
| Dgkg | diacylglycerol kinase, gamma | −2.05 | 0.035 |
| Ercc1 | excision repair cross-complementing rodent repair deficiency, complementation group 1 | 2.26 | 0.021 |
| Fnbp1 | formin binding protein 1 | −2.20 | 0.032 |
| Gal | galanin prepropeptide | 24.49 | 0.013 |
| Hells | helicase, lymphoid specific | 3.14 | 0.028 |
| Ifi204 | interferon activated gene 204 | −2.93 | 0.024 |
| Lrp8 | low density lipoprotein receptor-related protein 8, apolipoprotein e receptor | 2.11 | 0.021 |
| Mdga1 | MAM domain containing glycosylphosphatidylinositol anchor 1 | 3.66 | 0.012 |
| Meox2 | mesenchyme homeobox 2 | −3.40 | 0.034 |
| Mustn1 | musculoskeletal, embryonic nuclear protein 1 | −3.12 | 0.019 |
| Myo1e | myosin IE | 2.04 | 0.022 |
| Nfib | nuclear factor I/B | −2.10 | 0.029 |
| Ngf | nerve growth factor (beta polypeptide) | 3.33 | 0.019 |
| Plaur | plasminogen activator, urokinase receptor | 2.23 | 0.021 |
| Plxna2 | plexin A2 | 3.96 | 0.016 |
| Plxna4a | plexin A4, A | 3.68 | 0.045 |
| Ppap2b | phosphatidic acid phosphatase type 2B | −5.72 | 0.022 |
| Prdm1 | PR domain containing 1, with ZNF domain | 2.47 | 0.028 |
| Selenbp1 | selenium binding protein 1 | −6.38 | 0.035 |
| Sept4 | septin 4 | −2.26 | 0.032 |
| Smpd3 | sphingomyelin phosphodiesterase 3, neutral | −3.44 | 0.017 |
| Tgfb1 | transforming growth factor, beta 1 | 2.00 | 0.025 |
| Unc5c | unc-5 homolog C (C. elegans) | −2.07 | 0.028 |
| Wnt11 | wingless-type MMTV integration site family, member 11 | 3.82 | 0.018 |
| Wnt5a | wingless-type MMTV integration site family, member 5A | 4.55 | 0.033 |
Other Developmental Genes.
| Gene Symbol | DAVID Name | Fold Change | p-value |
| Arl4a | ADP-ribosylation factor-like 4A | 2.16 | 0.015 |
| Fras1 | Fraser syndrome 1 homolog (human) | −4.32 | 0.033 |
| Gldn | Gliomedin | 11.22 | 0.030 |
| Lef1 | lymphoid enhancer binding factor 1 | 2.84 | 0.028 |
| Lyn | v-yes-1 Yamaguchi sarcoma viral related oncogene homolog | 2.74 | 0.021 |
| Pcsk6 | proprotein convertase subtilisin/kexin type 6 | 2.84 | 0.016 |
| Prkcq | protein kinase C, theta | 3.31 | 0.019 |
| Ptprm | protein tyrosine phosphatase, receptor type, M | 2.15 | 0.029 |
| Slc1a3 | solute carrier family 1 (glial high affinity glutamate transporter), member 3 | 2.50 | 0.031 |
Figure 3Up-regulation of mRNA and protein levels of FGF-1, NGF and Wnt11 in SMCs by AdSmad3/TGF-β treatment.
Rat vascular SMCs were infected with AdSmad3 and treated with TGF-β (5 ng/ml) for 24 h. A. qRT-PCR was performed to evaluate gene expression of Fibroblast Growth Factor 1 (FGF1), Nerve Growth Factor (NGF) and wingless-type MMTV integration site family member 11 (Wnt11). B and C. Western blotting was performed to determine the protein production of these 3 growth factors contained in cell lysates (B) or secreted into media (C). Controls were AdGFP, AdGFP+ TGF-β and AdSmad3. **P<0.05, compared to all controls; *P<.05, compared to AdGFP; n = 3.
Figure 4Up-regulation of mRNA and protein levels of CD34 and CXCR4 in SMCs by AdSmad3/TGF-β treatment.
Rat vascular SMCs were infected with AdSmad3 and treated with TGF-β (5 ng/ml) for 24 h. A. qRT-PCR was performed to evaluate gene expression of CD34 and CXCR4. B. Western blotting was performed to determine the protein production of CD34 and CXCR4 in cell lysates. C. Time course of CD34 and CXCR4 gene expression after TGF-β treatment of AdSmad3-infected SMCs. Controls were AdGFP, AdGFP+ TGF-β and AdSmad3. **P<0.05, compared to all controls; *P<.05, compared to AdGFP; n = 3.
Figure 5Immunocytochemistry detection of CXCR4 and NGF up-regulated by AdSmad3/TGF-β treatment.
Rat vascular SMCs were infected with AdGFP or AdSmad3 and treated with TGF-β (5 ng/ml) for 24 hrs. Cells were fixed and subjected to immunostaining for CXCR4 (A) or NGF (B) as described in detail in Materials and Methods. CXCR4 or NGF positive cells were quantified as percent of GFP fluorescent cells. *P<0.05 compared to AdGFP, n = 3.
Figure 6TGF-β/Smad3 treatment affects expression of SMC contractile proteins.
Rat vascular SMCs were infected with AdSmad3 and treated with TGF-β (5 ng/ml) for 24 hrs. A. qRT-PCR expression of smooth muscle actin (SMA), calponin, and smooth muscle myosin heavy chain (SMMHC) (n = 3; *P<0.05 compared to AdGFP). B. Representative examples of Western blotting of SMA, calponin and SMMHC (n = 3). C. Quantification of Western Blotting (*P<0.05 compared to AdGFP).