Literature DB >> 24712780

A quantitative quantum-chemical analysis tool for the distribution of mechanical force in molecules.

Tim Stauch1, Andreas Dreuw1.   

Abstract

The promising field of mechanochemistry suffers from a general lack of understanding of the distribution and propagation of force in a stretched molecule, which limits its applicability up to the present day. In this article, we introduce the JEDI (Judgement of Energy DIstribution) analysis, which is the first quantum chemical method that provides a quantitative understanding of the distribution of mechanical stress energy among all degrees of freedom in a molecule. The method is carried out on the basis of static or dynamic calculations under the influence of an external force and makes use of a Hessian matrix in redundant internal coordinates (bond lengths, bond angles, and dihedral angles), so that all relevant degrees of freedom of a molecule are included and mechanochemical processes can be interpreted in a chemically intuitive way. The JEDI method is characterized by its modest computational effort, with the calculation of the Hessian being the rate-determining step, and delivers, except for the harmonic approximation, exact ab initio results. We apply the JEDI analysis to several example molecules in both static quantum chemical calculations and Born-Oppenheimer Molecular Dynamics simulations in which molecules are subject to an external force, thus studying not only the distribution and the propagation of strain in mechanically deformed systems, but also gaining valuable insights into the mechanochemically induced isomerization of trans-3,4-dimethylcyclobutene to trans,trans-2,4-hexadiene. The JEDI analysis can potentially be used in the discussion of sonochemical reactions, molecular motors, mechanophores, and photoswitches as well as in the development of molecular force probes.

Entities:  

Year:  2014        PMID: 24712780     DOI: 10.1063/1.4870334

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Some studies on generalized coordinate sets for polyatomic molecules.

Authors:  Wenjin Li; Ao Ma
Journal:  J Chem Phys       Date:  2015-12-14       Impact factor: 3.488

2.  Force-induced retro-click reaction of triazoles competes with adjacent single-bond rupture.

Authors:  Tim Stauch; Andreas Dreuw
Journal:  Chem Sci       Date:  2017-06-13       Impact factor: 9.825

3.  The activation efficiency of mechanophores can be modulated by adjacent polymer composition.

Authors:  Sourabh Kumar; Tim Stauch
Journal:  RSC Adv       Date:  2021-02-12       Impact factor: 3.361

4.  The rupture mechanism of rubredoxin is more complex than previously thought.

Authors:  Maximilian Scheurer; Andreas Dreuw; Martin Head-Gordon; Tim Stauch
Journal:  Chem Sci       Date:  2020-05-27       Impact factor: 9.825

5.  Theoretical simulation of the infrared signature of mechanically stressed polymer solids.

Authors:  Matthew S Sammon; Milan Ončák; Martin K Beyer
Journal:  Beilstein J Org Chem       Date:  2017-08-17       Impact factor: 2.883

6.  The Mechanism of Flex-Activation in Mechanophores Revealed By Quantum Chemistry.

Authors:  Lennart J Mier; Gheorghe Adam; Sourabh Kumar; Tim Stauch
Journal:  Chemphyschem       Date:  2020-10-07       Impact factor: 3.102

  6 in total

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