Literature DB >> 24710155

Shape representation for efficient landmark-based segmentation in 3-d.

Bulat Ibragimov, Boštjan Likar, Franjo Pernuš, Tomaž Vrtovec.   

Abstract

In this paper, we propose a novel approach to landmark-based shape representation that is based on transportation theory, where landmarks are considered as sources and destinations, all possible landmark connections as roads, and established landmark connections as goods transported via these roads. Landmark connections, which are selectively established, are identified through their statistical properties describing the shape of the object of interest, and indicate the least costly roads for transporting goods from sources to destinations. From such a perspective, we introduce three novel shape representations that are combined with an existing landmark detection algorithm based on game theory. To reduce computational complexity, which results from the extension from 2-D to 3-D segmentation, landmark detection is augmented by a concept known in game theory as strategy dominance. The novel shape representations, game-theoretic landmark detection and strategy dominance are combined into a segmentation framework that was evaluated on 3-D computed tomography images of lumbar vertebrae and femoral heads. The best shape representation yielded symmetric surface distance of 0.75 mm and 1.11 mm, and Dice coefficient of 93.6% and 96.2% for lumbar vertebrae and femoral heads, respectively. By applying strategy dominance, the computational costs were further reduced for up to three times.

Mesh:

Year:  2014        PMID: 24710155     DOI: 10.1109/TMI.2013.2296976

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  10 in total

1.  Fully automated quantitative cephalometry using convolutional neural networks.

Authors:  Sercan Ö Arık; Bulat Ibragimov; Lei Xing
Journal:  J Med Imaging (Bellingham)       Date:  2017-01-06

2.  Development of deep neural network for individualized hepatobiliary toxicity prediction after liver SBRT.

Authors:  Bulat Ibragimov; Diego Toesca; Daniel Chang; Yixuan Yuan; Albert Koong; Lei Xing
Journal:  Med Phys       Date:  2018-09-10       Impact factor: 4.071

3.  Deformable multisurface segmentation of the spine for orthopedic surgery planning and simulation.

Authors:  Rabia Haq; Jérôme Schmid; Roderick Borgie; Joshua Cates; Michel A Audette
Journal:  J Med Imaging (Bellingham)       Date:  2020-02-22

4.  A multi-center milestone study of clinical vertebral CT segmentation.

Authors:  Jianhua Yao; Joseph E Burns; Daniel Forsberg; Alexander Seitel; Abtin Rasoulian; Purang Abolmaesumi; Kerstin Hammernik; Martin Urschler; Bulat Ibragimov; Robert Korez; Tomaž Vrtovec; Isaac Castro-Mateos; Jose M Pozo; Alejandro F Frangi; Ronald M Summers; Shuo Li
Journal:  Comput Med Imaging Graph       Date:  2016-01-02       Impact factor: 4.790

5.  Segmentation of organs-at-risks in head and neck CT images using convolutional neural networks.

Authors:  Bulat Ibragimov; Lei Xing
Journal:  Med Phys       Date:  2017-02       Impact factor: 4.071

6.  Segmentation of tongue muscles from super-resolution magnetic resonance images.

Authors:  Bulat Ibragimov; Jerry L Prince; Emi Z Murano; Jonghye Woo; Maureen Stone; Boštjan Likar; Franjo Pernuš; Tomaž Vrtovec
Journal:  Med Image Anal       Date:  2014-11-23       Impact factor: 8.545

7.  AAR-RT - A system for auto-contouring organs at risk on CT images for radiation therapy planning: Principles, design, and large-scale evaluation on head-and-neck and thoracic cancer cases.

Authors:  Xingyu Wu; Jayaram K Udupa; Yubing Tong; Dewey Odhner; Gargi V Pednekar; Charles B Simone; David McLaughlin; Chavanon Apinorasethkul; Ontida Apinorasethkul; John Lukens; Dimitris Mihailidis; Geraldine Shammo; Paul James; Akhil Tiwari; Lisa Wojtowicz; Joseph Camaratta; Drew A Torigian
Journal:  Med Image Anal       Date:  2019-01-29       Impact factor: 8.545

8.  Spinal pedicle screw planning using deformable atlas registration.

Authors:  J Goerres; A Uneri; T De Silva; M Ketcha; S Reaungamornrat; M Jacobson; S Vogt; G Kleinszig; G Osgood; J-P Wolinsky; J H Siewerdsen
Journal:  Phys Med Biol       Date:  2017-02-08       Impact factor: 4.174

9.  Fully Automatic Localization and Segmentation of 3D Vertebral Bodies from CT/MR Images via a Learning-Based Method.

Authors:  Chengwen Chu; Daniel L Belavý; Gabriele Armbrecht; Martin Bansmann; Dieter Felsenberg; Guoyan Zheng
Journal:  PLoS One       Date:  2015-11-23       Impact factor: 3.240

10.  A Vertebral Segmentation Dataset with Fracture Grading.

Authors:  Maximilian T Löffler; Anjany Sekuboyina; Alina Jacob; Anna-Lena Grau; Andreas Scharr; Malek El Husseini; Mareike Kallweit; Claus Zimmer; Thomas Baum; Jan S Kirschke
Journal:  Radiol Artif Intell       Date:  2020-07-29
  10 in total

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