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Literature DB >> 24706907

Risks of double-counting in deep sequencing.

Michael W Schmitt¹, Edward J Fox, Jesse J Salk.

Abstract

Mesh：

Substances：
DNA, Circular

Year: 2014 PMID： 24706907 PMCID： PMC4000836 DOI： 10.1073/pnas.1400941111

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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4 in total

1. Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID.

Authors: Cassandra B Jabara; Corbin D Jones; Jeffrey Roach; Jeffrey A Anderson; Ronald Swanstrom
Journal: Proc Natl Acad Sci U S A Date: 2011-11-30 Impact factor: 11.205

2. High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.

Authors: Dianne I Lou; Jeffrey A Hussmann; Ross M McBee; Ashley Acevedo; Raul Andino; William H Press; Sara L Sawyer
Journal: Proc Natl Acad Sci U S A Date: 2013-11-15 Impact factor: 11.205

3. Detection and quantification of rare mutations with massively parallel sequencing.

Authors: Isaac Kinde; Jian Wu; Nick Papadopoulos; Kenneth W Kinzler; Bert Vogelstein
Journal: Proc Natl Acad Sci U S A Date: 2011-05-17 Impact factor: 11.205

4. Detection of ultra-rare mutations by next-generation sequencing.

Authors: Michael W Schmitt; Scott R Kennedy; Jesse J Salk; Edward J Fox; Joseph B Hiatt; Lawrence A Loeb
Journal: Proc Natl Acad Sci U S A Date: 2012-08-01 Impact factor: 11.205

4 in total

3 in total

Risks of double-counting in deep sequencing.

1. Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID.

2. High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.

3. Detection and quantification of rare mutations with massively parallel sequencing.

4. Detection of ultra-rare mutations by next-generation sequencing.

1. Reply to Schmitt et al.: Data-filtering schemes for avoiding double-counting in circle sequencing.

Review 2. Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations.

Review 3. Detecting Rare Mutations and DNA Damage with Sequencing-Based Methods.