Literature DB >> 24706888

Force-dependent isomerization kinetics of a highly conserved proline switch modulates the mechanosensing region of filamin.

Lorenz Rognoni1, Tobias Möst, Gabriel Žoldák, Matthias Rief.   

Abstract

Proline switches, controlled by cis-trans isomerization, have emerged as a particularly effective regulatory mechanism in a wide range of biological processes. In this study, we use single-molecule mechanical measurements to develop a full kinetic and energetic description of a highly conserved proline switch in the force-sensing domain 20 of human filamin and how prolyl isomerization modulates the force-sensing mechanism. Proline isomerization toggles domain 20 between two conformations. A stable cis conformation with slow unfolding, favoring the autoinhibited closed conformation of filamin's force-sensing domain pair 20-21, and a less stable, uninhibited conformation promoted by the trans form. The data provide detailed insight into the folding mechanisms that underpin the functionality of this binary switch and elucidate its remarkable efficiency in modulating force-sensing, thus combining two previously unconnected regulatory mechanisms, proline switches and mechanosensing.

Entities:  

Keywords:  force sensing; molecular memory; optical tweezers; protein folding; single molecule

Mesh:

Substances:

Year:  2014        PMID: 24706888      PMCID: PMC3992639          DOI: 10.1073/pnas.1319448111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

Review 1.  Sequence conservation in Ig-like domains: the role of highly conserved proline residues in the fibronectin type III superfamily.

Authors:  Annette Steward; Sima Adhya; Jane Clarke
Journal:  J Mol Biol       Date:  2002-05-10       Impact factor: 5.469

2.  The complex folding network of single calmodulin molecules.

Authors:  Johannes Stigler; Fabian Ziegler; Anja Gieseke; J Christof M Gebhardt; Matthias Rief
Journal:  Science       Date:  2011-10-28       Impact factor: 47.728

3.  On the cis to trans isomerization of prolyl-peptide bonds under tension.

Authors:  Jian Chen; Scott A Edwards; Frauke Gräter; Carsten Baldauf
Journal:  J Phys Chem B       Date:  2012-07-27       Impact factor: 2.991

4.  Dynamic force sensing of filamin revealed in single-molecule experiments.

Authors:  Lorenz Rognoni; Johannes Stigler; Benjamin Pelz; Jari Ylänne; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-13       Impact factor: 11.205

5.  Local structural changes caused by peptidyl-prolyl cis/trans isomerization in the native state of proteins.

Authors:  Ulf Reimer; Gunter Fischer
Journal:  Biophys Chem       Date:  2002-05-02       Impact factor: 2.352

6.  Peptide bond cis/trans isomerases: a biocatalysis perspective of conformational dynamics in proteins.

Authors:  Cordelia Schiene-Fischer; Tobias Aumüller; Gunter Fischer
Journal:  Top Curr Chem       Date:  2013

7.  The regulation mechanism for the auto-inhibition of binding of human filamin A to integrin.

Authors:  Ulla Pentikäinen; Jari Ylänne
Journal:  J Mol Biol       Date:  2009-08-20       Impact factor: 5.469

8.  A library of fluorescent peptides for exploring the substrate specificities of prolyl isomerases.

Authors:  Gabriel Zoldák; Tobias Aumüller; Christian Lücke; Jozef Hritz; Chris Oostenbrink; Gunter Fischer; Franz X Schmid
Journal:  Biochemistry       Date:  2009-11-03       Impact factor: 3.162

9.  Mechanical strain in actin networks regulates FilGAP and integrin binding to filamin A.

Authors:  A J Ehrlicher; F Nakamura; J H Hartwig; D A Weitz; T P Stossel
Journal:  Nature       Date:  2011-09-18       Impact factor: 49.962

10.  Mechanical perturbation of filamin A immunoglobulin repeats 20-21 reveals potential non-equilibrium mechanochemical partner binding function.

Authors:  Hu Chen; Saranya Chandrasekar; Michael P Sheetz; Thomas P Stossel; Fumihiko Nakamura; Jie Yan
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

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  15 in total

1.  Mechanically switching single-molecule fluorescence of GFP by unfolding and refolding.

Authors:  Ziad Ganim; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-03       Impact factor: 11.205

Review 2.  Multiscale mechanobiology: computational models for integrating molecules to multicellular systems.

Authors:  Michael Mak; Taeyoon Kim; Muhammad H Zaman; Roger D Kamm
Journal:  Integr Biol (Camb)       Date:  2015-05-27       Impact factor: 2.192

Review 3.  Dynamic bonds and their roles in mechanosensing.

Authors:  Cheng Zhu; Yunfeng Chen; Lining Arnold Ju
Journal:  Curr Opin Chem Biol       Date:  2019-09-27       Impact factor: 8.822

4.  Deletion of a Peptidylprolyl Isomerase Gene Results in the Inability of Caldicellulosiruptor bescii To Grow on Crystalline Cellulose without Affecting Protein Glycosylation or Growth on Soluble Substrates.

Authors:  Jordan F Russell; Matthew L Russo; Xuewen Wang; Neal Hengge; Daehwan Chung; Lance Wells; Yannick J Bomble; Janet Westpheling
Journal:  Appl Environ Microbiol       Date:  2020-10-01       Impact factor: 4.792

5.  Structure and energetic basis of overrepresented λ light chain in systemic light chain amyloidosis patients.

Authors:  Jun Zhao; Baohong Zhang; Jianwei Zhu; Ruth Nussinov; Buyong Ma
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2017-12-12       Impact factor: 5.187

6.  F-actin clustering and cell dysmotility induced by the pathological W148R missense mutation of filamin B at the actin-binding domain.

Authors:  Yongtong Zhao; Sandor S Shapiro; Masumi Eto
Journal:  Am J Physiol Cell Physiol       Date:  2015-10-21       Impact factor: 4.249

Review 7.  Force-induced remodelling of proteins and their complexes.

Authors:  Yun Chen; Sheena E Radford; David J Brockwell
Journal:  Curr Opin Struct Biol       Date:  2015-02-21       Impact factor: 6.809

8.  Decoding Single Molecule Time Traces with Dynamic Disorder.

Authors:  Wonseok Hwang; Il-Buem Lee; Seok-Cheol Hong; Changbong Hyeon
Journal:  PLoS Comput Biol       Date:  2016-12-27       Impact factor: 4.475

9.  A proline switch explains kinetic heterogeneity in a coupled folding and binding reaction.

Authors:  Franziska Zosel; Davide Mercadante; Daniel Nettels; Benjamin Schuler
Journal:  Nat Commun       Date:  2018-08-20       Impact factor: 14.919

10.  Peptidyl prolyl cis/trans isomerase activity on the cell surface correlates with extracellular matrix development.

Authors:  Weilin Lin; Malte Bonin; Annett Boden; Robert Wieduwild; Priyanka Murawala; Martin Wermke; Helena Andrade; Martin Bornhäuser; Yixin Zhang
Journal:  Commun Biol       Date:  2019-02-11
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