Literature DB >> 24705140

Crystal structure of an amphiphilic foldamer reveals a 48-mer assembly comprising a hollow truncated octahedron.

Vincenzo Pavone1, Shao-Qing Zhang2, Antonello Merlino3, Angela Lombardi3, Yibing Wu4, William F DeGrado4.   

Abstract

Foldamers provide an attractive medium to test the mechanisms by which biological macromolecules fold into complex three-dimensional structures, and ultimately to design novel protein-like architectures with properties unprecedented in nature. Here, we describe a large cage-like structure formed from an amphiphilic arylamide foldamer crystallized from aqueous solution. Forty-eight copies of the foldamer assemble into a 5-nm cage-like structure, an omnitruncated octahedron filled with well-ordered ice-like water molecules. The assembly is stabilized by a mix of arylamide stacking interaction, hydrogen bonding and hydrophobic forces. The omnitruncated octahedra tessellate to form a cubic crystal. These findings may provide an important step towards the design of nanostructured particles resembling spherical viruses.

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Year:  2014        PMID: 24705140      PMCID: PMC4013780          DOI: 10.1038/ncomms4581

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  20 in total

1.  Biomimetic facially amphiphilic antibacterial oligomers with conformationally stiff backbones.

Authors:  Haizhong Tang; Robert J Doerksen; Ticora V Jones; Michael L Klein; Gregory N Tew
Journal:  Chem Biol       Date:  2006-04

2.  Helix-packing motifs in membrane proteins.

Authors:  R F S Walters; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-05       Impact factor: 11.205

Review 3.  Foldamers as versatile frameworks for the design and evolution of function.

Authors:  Catherine M Goodman; Sungwook Choi; Scott Shandler; William F DeGrado
Journal:  Nat Chem Biol       Date:  2007-05       Impact factor: 15.040

4.  Crystal engineering: a holistic view.

Authors:  Gautam R Desiraju
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Crystal engineering: from molecule to crystal.

Authors:  Gautam R Desiraju
Journal:  J Am Chem Soc       Date:  2013-06-27       Impact factor: 15.419

Review 6.  De novo designed synthetic mimics of antimicrobial peptides.

Authors:  Richard W Scott; William F DeGrado; Gregory N Tew
Journal:  Curr Opin Biotechnol       Date:  2008-11-17       Impact factor: 9.740

7.  Toward beta-amino acid proteins: design, synthesis, and characterization of a fifteen kilodalton beta-peptide tetramer.

Authors:  E James Petersson; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2008-01-01       Impact factor: 15.419

8.  Foldamers with heterogeneous backbones.

Authors:  W Seth Horne; Samuel H Gellman
Journal:  Acc Chem Res       Date:  2008-07-01       Impact factor: 22.384

9.  De novo design of antimicrobial polymers, foldamers, and small molecules: from discovery to practical applications.

Authors:  Gregory N Tew; Richard W Scott; Michael L Klein; William F Degrado
Journal:  Acc Chem Res       Date:  2010-01-19       Impact factor: 22.384

10.  Computational design of self-assembling protein nanomaterials with atomic level accuracy.

Authors:  Neil P King; William Sheffler; Michael R Sawaya; Breanna S Vollmar; John P Sumida; Ingemar André; Tamir Gonen; Todd O Yeates; David Baker
Journal:  Science       Date:  2012-06-01       Impact factor: 47.728

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  6 in total

1.  Macromolecular Crystallography for Synthetic Abiological Molecules: Combining xMDFF and PHENIX for Structure Determination of Cyanostar Macrocycles.

Authors:  Abhishek Singharoy; Balasubramanian Venkatakrishnan; Yun Liu; Christopher G Mayne; Semin Lee; Chun-Hsing Chen; Adam Zlotnick; Klaus Schulten; Amar H Flood
Journal:  J Am Chem Soc       Date:  2015-06-29       Impact factor: 15.419

2.  Membrane active Janus-oligomers of β3-peptides.

Authors:  Imola Cs Szigyártó; Judith Mihály; András Wacha; Dóra Bogdán; Tünde Juhász; Gergely Kohut; Gitta Schlosser; Ferenc Zsila; Vlada Urlacher; Zoltán Varga; Ferenc Fülöp; Attila Bóta; István Mándity; Tamás Beke-Somfai
Journal:  Chem Sci       Date:  2020-06-15       Impact factor: 9.825

3.  Structure of a designed protein cage that self-assembles into a highly porous cube.

Authors:  Yen-Ting Lai; Eamonn Reading; Greg L Hura; Kuang-Lei Tsai; Arthur Laganowsky; Francisco J Asturias; John A Tainer; Carol V Robinson; Todd O Yeates
Journal:  Nat Chem       Date:  2014-11-10       Impact factor: 24.427

4.  Optimizing side chains for crystal growth from water: a case study of aromatic amide foldamers.

Authors:  Xiaobo Hu; Simon J Dawson; Pradeep K Mandal; Xavier de Hatten; Benoit Baptiste; Ivan Huc
Journal:  Chem Sci       Date:  2017-03-08       Impact factor: 9.825

5.  Computational Design of Single-Peptide Nanocages with Nanoparticle Templating.

Authors:  José A Villegas; Nairiti J Sinha; Naozumi Teramoto; Christopher D Von Bargen; Darrin J Pochan; Jeffery G Saven
Journal:  Molecules       Date:  2022-02-12       Impact factor: 4.411

6.  Surfactant-facilitated crystallisation of water-soluble foldamers.

Authors:  G W Collie; K Pulka-Ziach; G Guichard
Journal:  Chem Sci       Date:  2016-02-10       Impact factor: 9.825

  6 in total

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