Literature DB >> 24699750

Expression, crystallization and preliminary X-ray crystallographic analysis of D-alanine-D-alanine ligase from OXA-23-producing Acinetobacter baumannii K0420859.

Kim-Hung Huynh1, Huyen-Thi Tran2, Tan-Viet Pham2, Ho-Phuong-Thuy Ngo1, Sun-Shin Cha3, Kyung Min Chung4, Sang Hee Lee5, Lin-Woo Kang1.   

Abstract

Acinetobacter baumannii causes bacteraemia, pneumonia, other respiratory-tract and urinary-tract infections in humans. OXA-23 carbapenemase-producing A. baumannii K0420859 (A. baumannii OXA-23) is resistant to carbapenem, a common antibacterial drug. To develop an efficient and novel antibacterial drug against A. baumannii OXA-23, D-alanine-D-alanine ligase, which is essential in bacterial cell-wall synthesis, is of interest. Here, the D-alanine-D-alanine ligase (AbDdl) gene from A. baumannii OXA-23 was cloned and expressed, and the AbDdl protein was purified and crystallized; this enzyme can be used as a novel target for an antibacterial drug against A. baumannii OXA-23. The AbDdl crystal diffracted to a resolution of 2.8 Å and belonged to the orthorhombic space group P212121, with unit-cell parameters a = 113.4, b = 116.7, c = 176.5 Å, a corresponding VM of 2.8 Å(3) Da(-1) and a solvent content of 56.3%, and six protomers in the asymmetric unit.

Entities:  

Keywords:  OXA-23-producing Acinetobacter baumannii; cell-wall synthesis; d-alanine-d-alanine ligase

Mesh:

Substances:

Year:  2014        PMID: 24699750      PMCID: PMC3976074          DOI: 10.1107/S2053230X14005081

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  10 in total

1.  SOLVE and RESOLVE: automated structure solution, density modification and model building.

Authors:  Thomas Terwilliger
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

2.  Preparation, crystallization and preliminary X-ray crystallographic analysis of OXA-23, a carbapenemase conferring widespread antibiotic resistance.

Authors:  Jung Hun Lee; Seung Ghyu Sohn; Ha Il Jung; Young Jun An; Jae Jin Lee; Lin-Woo Kang; Sang Hee Lee
Journal:  Indian J Biochem Biophys       Date:  2011-12       Impact factor: 1.918

3.  Carbapenem-resistant Acinetobacter baumannii isolates expressing the blaOXA-23 gene associated with ISAba4 in Belgium.

Authors:  Pierre Bogaerts; Gaelle Cuzon; Thierry Naas; Caroline Bauraing; Ariane Deplano; Bénédicte Lissoir; Patrice Nordmann; Youri Glupczynski
Journal:  Antimicrob Agents Chemother       Date:  2008-09-02       Impact factor: 5.191

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Expression, crystallization and preliminary X-ray crystallographic analysis of Xoo0352, D-alanine-D-alanine ligase A, from Xanthomonas oryzae pv. oryzae.

Authors:  Thanh Thi Ngoc Doan; Jin-Kwang Kim; Hyesoon Kim; Yeh-Jin Ahn; Jeong-Gu Kim; Byoung-Moo Lee; Lin-Woo Kang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-11-28

6.  Rapid automatic NCS identification using heavy-atom substructures.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

7.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

8.  First report of an OXA-23 carbapenemase-producing Acinetobacter baumannii clinical isolate related to Tn2006 in Spain.

Authors:  P Espinal; M D Macià; I Roca; E Gato; E Ruíz; F Fernández-Cuenca; A Oliver; J Rodríguez-Baño; G Bou; M Tomás; J Vila
Journal:  Antimicrob Agents Chemother       Date:  2012-10-15       Impact factor: 5.191

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

  10 in total
  2 in total

1.  Expression, crystallization and preliminary X-ray crystallographic analysis of cystathionine β-lyase from Acinetobacter baumannii OXA-23.

Authors:  Diem Quynh Nguyen; Ho Phuong Thuy Ngo; Yeh Jin Ahn; Sang Hee Lee; Lin Woo Kang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-09-25       Impact factor: 1.056

2.  The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding.

Authors:  Kim-Hung Huynh; Myoung-ki Hong; Clarice Lee; Huyen-Thi Tran; Sang Hee Lee; Yeh-Jin Ahn; Sun-Shin Cha; Lin-Woo Kang
Journal:  J Microbiol       Date:  2015-10-28       Impact factor: 3.422

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.