Literature DB >> 24699743

Preliminary crystallographic analysis of a double mutant of the acetyl xylo-oligosaccharide esterase Axe2 in its dimeric form.

Shifra Lansky1, Onit Alalouf2, Rachel Salama2, Hay Dvir3, Yuval Shoham2, Gil Shoham1.   

Abstract

Xylans are polymeric sugars constituting a significant part of the plant cell wall. They are usually substituted with acetyl side groups attached at positions 2 or 3 of the xylose backbone units. Acetylxylan esterases are part of the hemicellulolytic system of many microorganisms which utilize plant biomass for growth. These enzymes hydrolyze the ester linkages of the xylan acetyl groups and thus improve the accessibility of main-chain-hydrolyzing enzymes and their ability to break down the sugar backbone units. The acetylxylan esterases are therefore critically important for those microorganisms and as such could be used for a wide range of biotechnological applications. The structure of an acetylxylan esterase (Axe2) isolated from the thermophilic bacterium Geobacillus stearothermophilus T6 has been determined, and it has been demonstrated that the wild-type enzyme is present as a unique torus-shaped octamer in the crystal and in solution. In order to understand the functional origin of this unique oligomeric structure, a series of rational noncatalytic, site-specific mutations have been made on Axe2. Some of these mutations led to a different dimeric form of the protein, which showed a significant reduction in catalytic activity. One of these double mutants, Axe2-Y184F-W190P, has recently been overexpressed, purified and crystallized. The best crystals obtained belonged to the orthorhombic space group P212121, with unit-cell parameters a = 71.1, b = 106.0, c = 378.6 Å. A full diffraction data set to 2.3 Å resolution has been collected from a flash-cooled crystal of this type at 100 K using synchrotron radiation. This data set is currently being used for the three-dimensional structure analysis of the Axe2-Y184F-W190P mutant in its dimeric form.

Entities:  

Keywords:  Geobacillus stearothermophilus; double mutant; oligomerization; serine esterase; xylan esterase; xylan utilization

Mesh:

Substances:

Year:  2014        PMID: 24699743      PMCID: PMC3976067          DOI: 10.1107/S2053230X14004129

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  43 in total

1.  The structure of an inverting GH43 beta-xylosidase from Geobacillus stearothermophilus with its substrate reveals the role of the three catalytic residues.

Authors:  Christian Brüx; Alon Ben-David; Dalia Shallom-Shezifi; Maya Leon; Karsten Niefind; Gil Shoham; Yuval Shoham; Dietmar Schomburg
Journal:  J Mol Biol       Date:  2006-03-20       Impact factor: 5.469

2.  Enzyme-substrate complex structures of a GH39 beta-xylosidase from Geobacillus stearothermophilus.

Authors:  Mirjam Czjzek; Alon Ben David; Tsafrir Bravman; Gil Shoham; Bernard Henrissat; Yuval Shoham
Journal:  J Mol Biol       Date:  2005-09-20       Impact factor: 5.469

3.  Crystallization and preliminary crystallographic analysis of Axe2, an acetylxylan esterase from Geobacillus stearothermophilus.

Authors:  Shifra Lansky; Onit Alalouf; Vered Solomon; Anat Alhassid; Lata Govada; Naomi E Chayen; Naomi E Chayan; Hassan Belrhali; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-03-28

4.  Crystallization and preliminary X-ray analysis of the thermostable alkaline-tolerant xylanase from Bacillus stearothermophilus T-6.

Authors:  A Teplitsky; H Feinberg; R Gilboa; A Lapidot; A Mechaly; V Stojanoff; M Capel; Y Shoham; G Shoham
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-09-01

5.  Structure determination of the extracellular xylanase from Geobacillus stearothermophilus by selenomethionyl MAD phasing.

Authors:  A Teplitsky; A Mechaly; V Stojanoff; G Sainz; G Golan; H Feinberg; R Gilboa; V Reiland; G Zolotnitsky; D Shallom; A Thompson; Y Shoham; G Shoham
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-04-21

6.  Functional characterization of the galactan utilization system of Geobacillus stearothermophilus.

Authors:  Orly Tabachnikov; Yuval Shoham
Journal:  FEBS J       Date:  2013-01-07       Impact factor: 5.542

7.  Effect of dimer dissociation on activity and thermostability of the alpha-glucuronidase from Geobacillus stearothermophilus: dissecting the different oligomeric forms of family 67 glycoside hydrolases.

Authors:  Dalia Shallom; Gali Golan; Gil Shoham; Yuval Shoham
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

8.  Crystallization and preliminary crystallographic analysis of GanB, a GH42 intracellular β-galactosidase from Geobacillus stearothermophilus.

Authors:  Hodaya V Solomon; Orly Tabachnikov; Hadar Feinberg; Lata Govada; Naomi E Chayen; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

9.  Action of xylan deacetylating enzymes on monoacetyl derivatives of 4-nitrophenyl glycosides of β-D-xylopyranose and α-L-arabinofuranose.

Authors:  Peter Biely; Mária Mastihubová; Maija Tenkanen; Jaime Eyzaguirre; Xin-Liang Li; Mária Vršanská
Journal:  J Biotechnol       Date:  2010-10-26       Impact factor: 3.307

10.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

View more
  3 in total

1.  Preliminary crystallographic analysis of Xyn52B2, a GH52 β-D-xylosidase from Geobacillus stearothermophilus T6.

Authors:  Roie Dann; Shifra Lansky; Noa Lavid; Arie Zehavi; Valery Belakhov; Timor Baasov; Hay Dvir; Babu Manjasetty; Hassan Belrhali; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

2.  Cloning, purification and preliminary crystallographic analysis of Ara127N, a GH127 β-L-arabinofuranosidase from Geobacillus stearothermophilus T6.

Authors:  Shifra Lansky; Rachel Salama; Roie Dann; Izhak Shner; Babu A Manjasetty; Hassan Belrhali; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

Review 3.  Structural and chemical biology of deacetylases for carbohydrates, proteins, small molecules and histones.

Authors:  Marco Bürger; Joanne Chory
Journal:  Commun Biol       Date:  2018-12-05
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.