| Literature DB >> 24693973 |
Guicheng Zhang1, Oleksii A Skorokhod, Siew-Kim Khoo, Ruth Aguilar, Selma Wiertsema, Augusto J Nhabomba, Tiziana Marrocco, Michelle McNamara-Smith, Maria Nelia Manaca, Arnoldo Barbosa, Llorenç Quintó, Catherine M Hayden, Jack Goldblatt, Caterina Guinovart, Pedro L Alonso, Carlota Dobaño, Evelin Schwarzer, Peter N LeSouëf.
Abstract
BACKGROUND: Advanced oxidation protein products (AOPP) are newly identified efficient oxidative stress biomarkers. In a longitudinal birth cohort the effects were investigated of genetic polymorphisms in five oxidative pathway genes on AOPP levels.Entities:
Mesh:
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Year: 2014 PMID: 24693973 PMCID: PMC4230024 DOI: 10.1186/1475-2875-13-134
Source DB: PubMed Journal: Malar J ISSN: 1475-2875 Impact factor: 2.979
Frequencies of the 12 polymorphisms in the five oxidative pathway genes
| RS1002149(G/T) | |||||
| | GG | 159 | 55.0 | 24.6 | 0.11 |
| | GT | 118 | 40.8 | | |
| | TT | 12 | 4.2 | | |
| RS3594 (C/A) | |||||
| | CC | 243 | 82.1 | 9.5 | 0.73 |
| | CA | 50 | 16.9 | | |
| | AA | 3 | 1.0 | | |
| RS10948751 (A/C) | |||||
| | AA | 104 | 35.6 | 40.6 | 0.81 |
| | CA | 139 | 47.6 | | |
| | CC | 49 | 16.8 | | |
| RS1901773 (G/C) | |||||
| | GG | 69 | 25.6 | 48.1 | 0.46 |
| | CG | 142 | 52.6 | | |
| | CC | 59 | 21.9 | | |
| RS7742367 (T/C) | |||||
| | TT | 100 | 35.7 | 40.7 | 0.71 |
| | CT | 132 | 47.1 | | |
| | CC | 48 | 17.1 | | |
| RS1695 (A/G) | |||||
| | AA | 81 | 28.0 | 47.4 | 0.81 |
| | AG | 142 | 49.1 | | |
| | GG | 66 | 22.8 | | |
| RS17593068 (T/G) | |||||
| | TT | 79 | 28.0 | 49.1 | 0.15 |
| | TG | 129 | 45.7 | | |
| | GG | 74 | 26.2 | | |
| RS6591256 (A/G) | |||||
| | AA | 77 | 26.6 | 48.3 | 1.0 |
| | AG | 146 | 50.3 | | |
| | GG | 67 | 23.1 | | |
| RS11555832 (T/C) | |||||
| | TT | 107 | 37.4 | 0.40 | 0.31 |
| | CT | 129 | 45.1 | | |
| | CC | 50 | 17.5 | | |
| RS17883725 (AG/DEL) | |||||
| | AG | 81 | 29.2 | 49.5 | 0.02 |
| | AG.DEL | 118 | 42.6 | | |
| | DEL.DEL | 78 | 28.2 | | |
| RS17885925 (T/C) | |||||
| | TT | 275 | 92.3 | 3.9 | 1.0 |
| | CT | 23 | 7.7 | | |
| RS4880 (T/C) | |||||
| | TT | 95 | 32.3 | 42.3 | 0.55 |
| | CT | 149 | 50.7 | | |
| CC | 50 | 17.0 | |||
MAF Minor Allele Frequency.
HWE Hardy-Weinberg Equilibrium.
Levels of AOPP by cross-section
| 2.5 | 302 | 352.4 | 329.5 | 376.8 |
| 5.5 | 300 | 263.9 | 245.4 | 283.9 |
| 10.5 | 296 | 207.5 | 192.3 | 223.9 |
| 15 | 283 | 154.0 | 141.6 | 167.5 |
| 24 | 274 | 104.2 | 96.8 | 112.1 |
GM Geometric mean.
CI Confidence Interval.
Figure 1AOPP levels at the five time points and PCA scores stratified by cluster membership. A: AOPP levels (geometric mean and 95% confidence intervals) at the five time points; B: PCA scores; Cluster membership was clarified using K-Means Cluster Analysis.
Figure 2AOPP levels at the five time points and PCA scores (mean and 95% confidence intervals) stratified by anaemia at two years. A: AOPP levels (geometric mean and 95% confidence intervals) at the five time points; B: PCA scores (geometric mean and 95% confidence intervals); Anaemia was defined at age two years.
Figure 3AOPP levels at the five time points and PCA scores stratified by clinical malaria at two years. A: AOPP levels (geometric mean and 95% confidence intervals) at the five time points; B: PCA scores (mean and 95% confidence intervals); Clinical malaria was defined at age two years.
Figure 4Associations of the RS10948751 genotype with the PCA scores (mean and 95% confidence intervals); Analysis of variance was employed for data analysis.
Figure 5Associations of the RS3594 genotype with the cluster membership and with anaemia; Chi-square tests were used. A: GSR RS3594 and cluster membership; B. GSR RS3594 and anaemia.
Figure 6Associations of plasma AOPP levels (geometric mean and 95% confidence intervals) with the genotypes of RS10948751 and RS17885925; Mixed linear model was employed and adjusted geometric means (adjusted for age and anaemia) were presented.