Literature DB >> 24683431

On Numerical Aspects of Bayesian Model Selection in High and Ultrahigh-dimensional Settings.

Valen E Johnson1.   

Abstract

This article examines the convergence properties of a Bayesian model selection procedure based on a non-local prior density in ultrahigh-dimensional settings. The performance of the model selection procedure is also compared to popular penalized likelihood methods. Coupling diagnostics are used to bound the total variation distance between iterates in an Markov chain Monte Carlo (MCMC) algorithm and the posterior distribution on the model space. In several simulation scenarios in which the number of observations exceeds 100, rapid convergence and high accuracy of the Bayesian procedure is demonstrated. Conversely, the coupling diagnostics are successful in diagnosing lack of convergence in several scenarios for which the number of observations is less than 100. The accuracy of the Bayesian model selection procedure in identifying high probability models is shown to be comparable to commonly used penalized likelihood methods, including extensions of smoothly clipped absolute deviations (SCAD) and least absolute shrinkage and selection operator (LASSO) procedures.

Entities:  

Keywords:  MCMC algorithm; SCAD; convergence diagnostic; coupling; penalized likelihood; sure independence screening; variable selection

Year:  2013        PMID: 24683431      PMCID: PMC3968919          DOI: 10.1214/13-BA818

Source DB:  PubMed          Journal:  Bayesian Anal        ISSN: 1931-6690            Impact factor:   3.728


  2 in total

1.  Discussion of "Sure Independence Screening for Ultra-High Dimensional Feature Space.

Authors:  Hao Helen Zhang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-11       Impact factor: 4.488

2.  A Selective Overview of Variable Selection in High Dimensional Feature Space.

Authors:  Jianqing Fan; Jinchi Lv
Journal:  Stat Sin       Date:  2010-01       Impact factor: 1.261

  2 in total
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Journal:  Int J Biostat       Date:  2017-01-31       Impact factor: 0.968

2.  Multiclass linear discriminant analysis with ultrahigh-dimensional features.

Authors:  Yanming Li; Hyokyoung G Hong; Yi Li
Journal:  Biometrics       Date:  2019-06-18       Impact factor: 2.571

3.  Bayesian Multiresolution Variable Selection for Ultra-High Dimensional Neuroimaging Data.

Authors:  Yize Zhao; Jian Kang; Qi Long
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018 Mar-Apr       Impact factor: 3.710

4.  Structured Genome-Wide Association Studies with Bayesian Hierarchical Variable Selection.

Authors:  Yize Zhao; Hongtu Zhu; Zhaohua Lu; Rebecca C Knickmeyer; Fei Zou
Journal:  Genetics       Date:  2019-04-22       Impact factor: 4.562

5.  Bayesian variable selection for binary outcomes in high-dimensional genomic studies using non-local priors.

Authors:  Amir Nikooienejad; Wenyi Wang; Valen E Johnson
Journal:  Bioinformatics       Date:  2016-01-06       Impact factor: 6.937

  5 in total

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