Literature DB >> 28157692

Bayesian Variable Selection Methods for Matched Case-Control Studies.

Josephine Asafu-Adjei1, G Tadesse Mahlet2, Brent Coull1, Raji Balasubramanian1, Michael Lev1, Lee Schwamm1, Rebecca Betensky1.   

Abstract

Matched case-control designs are currently used in many biomedical applications. To ensure high efficiency and statistical power in identifying features that best discriminate cases from controls, it is important to account for the use of matched designs. However, in the setting of high dimensional data, few variable selection methods account for matching. Bayesian approaches to variable selection have several advantages, including the fact that such approaches visit a wider range of model subsets. In this paper, we propose a variable selection method to account for case-control matching in a Bayesian context and apply it using simulation studies, a matched brain imaging study conducted at Massachusetts General Hospital, and a matched cardiovascular biomarker study conducted by the High Risk Plaque Initiative.

Entities:  

Keywords:  Bayesian analysis; conditional logistic regression; matched case-control studies; variable selection methods

Mesh:

Year:  2017        PMID: 28157692      PMCID: PMC5505078          DOI: 10.1515/ijb-2016-0043

Source DB:  PubMed          Journal:  Int J Biostat        ISSN: 1557-4679            Impact factor:   0.968


  21 in total

1.  Gene selection: a Bayesian variable selection approach.

Authors:  Kyeong Eun Lee; Naijun Sha; Edward R Dougherty; Marina Vannucci; Bani K Mallick
Journal:  Bioinformatics       Date:  2003-01       Impact factor: 6.937

2.  On Numerical Aspects of Bayesian Model Selection in High and Ultrahigh-dimensional Settings.

Authors:  Valen E Johnson
Journal:  Bayesian Anal       Date:  2013-12-01       Impact factor: 3.728

3.  Analysis of matched case-control data with multiple ordered disease states: possible choices and comparisons.

Authors:  Bhramar Mukherjee; Ivy Liu; Samiran Sinha
Journal:  Stat Med       Date:  2007-07-30       Impact factor: 2.373

4.  Multivariate analysis of MRI data for Alzheimer's disease, mild cognitive impairment and healthy controls.

Authors:  Eric Westman; Andrew Simmons; Yi Zhang; J-Sebastian Muehlboeck; Catherine Tunnard; Yawu Liu; Louis Collins; Alan Evans; Patrizia Mecocci; Bruno Vellas; Magda Tsolaki; Iwona Kłoszewska; Hilkka Soininen; Simon Lovestone; Christian Spenger; Lars-Olof Wahlund
Journal:  Neuroimage       Date:  2010-08-25       Impact factor: 6.556

5.  Cardiac autonomic derangement and arrhythmias in right-sided stroke with insular involvement.

Authors:  Furio Colivicchi; Andrea Bassi; Massimo Santini; Carlo Caltagirone
Journal:  Stroke       Date:  2004-07-22       Impact factor: 7.914

6.  Cancer classification and prediction using logistic regression with Bayesian gene selection.

Authors:  Xiaobo Zhou; Kuang-Yu Liu; Stephen T C Wong
Journal:  J Biomed Inform       Date:  2004-08       Impact factor: 6.317

7.  Hospital acquired pneumonia is linked to right hemispheric peri-insular stroke.

Authors:  André Kemmling; Michael H Lev; Seyedmehdi Payabvash; Rebecca A Betensky; Jing Qian; Shihab Masrur; Lee H Schwamm
Journal:  PLoS One       Date:  2013-08-07       Impact factor: 3.240

8.  Feature selection for predicting tumor metastases in microarray experiments using paired design.

Authors:  Qihua Tan; Mads Thomassen; Torben A Kruse
Journal:  Cancer Inform       Date:  2007-03-20

9.  Identification of a panel of sensitive and specific DNA methylation markers for squamous cell lung cancer.

Authors:  Paul P Anglim; Janice S Galler; Michael N Koss; Jeffrey A Hagen; Sally Turla; Mihaela Campan; Daniel J Weisenberger; Peter W Laird; Kimberly D Siegmund; Ite A Laird-Offringa
Journal:  Mol Cancer       Date:  2008-07-10       Impact factor: 27.401

10.  MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues.

Authors:  Alex Lewin; Habib Saadi; James E Peters; Aida Moreno-Moral; James C Lee; Kenneth G C Smith; Enrico Petretto; Leonardo Bottolo; Sylvia Richardson
Journal:  Bioinformatics       Date:  2015-10-26       Impact factor: 6.937

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  2 in total

1.  Extending Classification Algorithms to Case-Control Studies.

Authors:  Bryan Stanfill; Sarah Reehl; Lisa Bramer; Ernesto S Nakayasu; Stephen S Rich; Thomas O Metz; Marian Rewers; Bobbie-Jo Webb-Robertson
Journal:  Biomed Eng Comput Biol       Date:  2019-07-15

Review 2.  A Review of Matched-pairs Feature Selection Methods for Gene Expression Data Analysis.

Authors:  Sen Liang; Anjun Ma; Sen Yang; Yan Wang; Qin Ma
Journal:  Comput Struct Biotechnol J       Date:  2018-02-25       Impact factor: 7.271

  2 in total

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