Literature DB >> 24682260

Niabella thaonhiensis sp. nov., isolated from the forest soil of Kyonggi University in Korea.

Van H T Pham1, Jaisoo Kim.   

Abstract

Strain NHI-24(T) was isolated from forest soil by a polycarbonate membrane transwell plate. It is a Gram-negative, rod-shaped, non-motile, non-spore-forming bacterium. Phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain NHI-24(T) is closely related to members of the genus Niabella: N. drilacis E90(T) (97.7 %), N. tibetensis 15-4(T) (96.7 %), N. aurantiaca R2A15-11(T) (96.5 %), N. hirudinis E96(T) (95.8 %), N. soli JS13-8(T) (94.7 %), N. ginsengisoli NBRC106414(T) (94.4 %), and N. yanshanensis CCBAU 05354(T) (94.2 %). Growth temperatures range widely, from 15 to 37 °C, with 30 °C as the optimum. Salt tolerance ranges from 0 to 2 %. The strain grows at pH 6.5-11.0, with an optimal range of pH 7.0-9.5. Cells produce flexirubin-type pigments, and the predominant menaquinone is MK-7. The major fatty acids of strain NHI-24(T) are iso-C15:0 (36.72 %), iso-C15:1 G (20.8 %), and summed feature 3 (C16:1 ω7c/C16:1 ω6c; 15.2 %). DNA-DNA hybridization values between strain NHI-24(T) and members of the genus Niabella range from 37 to 53 %. Based on these results, it is proposed that strain NHI-24(T) represents a novel species of the genus Niabella with the name Niabella thaonhiensis (= KACC 17215(T) = KEMB 9005-018(T) = JCM 18864(T)).

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Year:  2014        PMID: 24682260     DOI: 10.1007/s00284-014-0565-0

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  14 in total

Review 1.  Cultivation of unculturable soil bacteria.

Authors:  Van H T Pham; Jaisoo Kim
Journal:  Trends Biotechnol       Date:  2012-07-07       Impact factor: 19.536

2.  Bacillus thaonhiensis sp. nov., a new species, was isolated from the forest soil of Kyonggi University by using a modified culture method.

Authors:  H T Van Pham; Jaisoo Kim
Journal:  Curr Microbiol       Date:  2013-08-31       Impact factor: 2.188

3.  Niabella soli sp. nov., isolated from soil from Jeju Island, Korea.

Authors:  Hang-Yeon Weon; Byung-Yong Kim; Jae-Ho Joa; Soon-Wo Kwon; Wan-Gyu Kim; Bon-Sung Koo
Journal:  Int J Syst Evol Microbiol       Date:  2008-02       Impact factor: 2.747

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Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

5.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

6.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Niabella tibetensis sp. nov., isolated from soil, and emended description of the genus Niabella.

Authors:  Jun Dai; Fan Jiang; Yang Wang; Bo Yu; Huan Qi; Chengxiang Fang; Congyi Zheng
Journal:  Int J Syst Evol Microbiol       Date:  2010-06-18       Impact factor: 2.747

9.  Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea.

Authors:  Byung-Yong Kim; Hang-Yeon Weon; Seung-Hee Yoo; Seung-Beom Hong; Soon-Wo Kwon; Erko Stackebrandt; Seung-Joo Go
Journal:  Int J Syst Evol Microbiol       Date:  2007-03       Impact factor: 2.747

10.  Niabella yanshanensis sp. nov., isolated from the soybean rhizosphere.

Authors:  Hao Wang; Yun Zeng Zhang; Chao Xin Man; Wen Feng Chen; Xin Hua Sui; Ying Li; Xiao Xia Zhang; Wen Xin Chen
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-23       Impact factor: 2.747

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  2 in total

1.  Niabella ginsenosidivorans sp. nov., isolated from compost.

Authors:  Kwon-Jung Yi; Wan-Taek Im; Dong-Woon Kim; Qing Mei Liu; Soo-Ki Kim
Journal:  J Microbiol       Date:  2015-10-28       Impact factor: 3.422

2.  Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland.

Authors:  Sheng-Zhi Guo; Tong Wu; Hai-Zhen Zhu; Lei Yan; Zhi-Pei Liu; De-Feng Li; Cheng-Ying Jiang; Shuang-Jiang Liu; Xi-Hui Shen
Journal:  Int J Syst Evol Microbiol       Date:  2022-03       Impact factor: 2.689

  2 in total

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