Literature DB >> 24680887

Whole-exome sequencing identifies KIZ as a ciliary gene associated with autosomal-recessive rod-cone dystrophy.

Said El Shamieh1, Marion Neuillé1, Angélique Terray1, Elise Orhan1, Christel Condroyer1, Vanessa Démontant1, Christelle Michiels1, Aline Antonio1, Fiona Boyard1, Marie-Elise Lancelot1, Mélanie Letexier2, Jean-Paul Saraiva2, Thierry Léveillard1, Saddek Mohand-Saïd3, Olivier Goureau1, José-Alain Sahel4, Christina Zeitz5, Isabelle Audo6.   

Abstract

Rod-cone dystrophy (RCD), also known as retinitis pigmentosa, is a progressive inherited retinal disorder characterized by photoreceptor cell death and genetic heterogeneity. Mutations in many genes have been implicated in the pathophysiology of RCD, but several others remain to be identified. Herein, we applied whole-exome sequencing to a consanguineous family with one subject affected with RCD and identified a homozygous nonsense mutation, c.226C>T (p.Arg76(∗)), in KIZ, which encodes centrosomal protein kizuna. Subsequent Sanger sequencing of 340 unrelated individuals with sporadic and autosomal-recessive RCD identified two other subjects carrying pathogenic variants in KIZ: one with the same homozygous nonsense mutation (c.226C>T [p.Arg76(∗)]) and another with compound-heterozygous mutations c.119_122delAACT (p.Lys40Ilefs(∗)14) and c.52G>T (p.Glu18(∗)). Transcriptomic analysis in mice detected mRNA levels of the mouse ortholog (Plk1s1) in rod photoreceptors, as well as its decreased expression when photoreceptors degenerated in rd1 mice. The presence of the human KIZ transcript was confirmed by quantitative RT-PCR in the retina, the retinal pigment epithelium, fibroblasts, and whole-blood cells (highest expression was in the retina). RNA in situ hybridization demonstrated the presence of Plk1s1 mRNA in the outer nuclear layer of the mouse retina. Immunohistology revealed KIZ localization at the basal body of the cilia in human fibroblasts, thus shedding light on another ciliary protein implicated in autosomal-recessive RCD.
Copyright © 2014 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24680887      PMCID: PMC3980423          DOI: 10.1016/j.ajhg.2014.03.005

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  48 in total

1.  Transcriptional code and disease map for adult retinal cell types.

Authors:  Sandra Siegert; Erik Cabuy; Brigitte Gross Scherf; Hubertus Kohler; Satchidananda Panda; Yun-Zheng Le; Hans Jörg Fehling; Dimos Gaidatzis; Michael B Stadler; Botond Roska
Journal:  Nat Neurosci       Date:  2012-01-22       Impact factor: 24.884

2.  Mutations in RAB28, encoding a farnesylated small GTPase, are associated with autosomal-recessive cone-rod dystrophy.

Authors:  Susanne Roosing; Klaus Rohrschneider; Avigail Beryozkin; Dror Sharon; Nicole Weisschuh; Jennifer Staller; Susanne Kohl; Lina Zelinger; Theo A Peters; Kornelia Neveling; Tim M Strom; L Ingeborgh van den Born; Carel B Hoyng; Caroline C W Klaver; Ronald Roepman; Bernd Wissinger; Eyal Banin; Frans P M Cremers; Anneke I den Hollander
Journal:  Am J Hum Genet       Date:  2013-06-06       Impact factor: 11.025

3.  Whole genome sequencing in patients with retinitis pigmentosa reveals pathogenic DNA structural changes and NEK2 as a new disease gene.

Authors:  Koji M Nishiguchi; Richard G Tearle; Yangfan P Liu; Edwin C Oh; Noriko Miyake; Paola Benaglio; Shyana Harper; Hanna Koskiniemi-Kuendig; Giulia Venturini; Dror Sharon; Robert K Koenekoop; Makoto Nakamura; Mineo Kondo; Shinji Ueno; Tetsuhiro R Yasuma; Jacques S Beckmann; Shiro Ikegawa; Naomichi Matsumoto; Hiroko Terasaki; Eliot L Berson; Nicholas Katsanis; Carlo Rivolta
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

Review 4.  Non-syndromic retinal ciliopathies: translating gene discovery into therapy.

Authors:  Alejandro Estrada-Cuzcano; Ronald Roepman; Frans P M Cremers; Anneke I den Hollander; Dorus A Mans
Journal:  Hum Mol Genet       Date:  2012-07-26       Impact factor: 6.150

5.  Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness.

Authors:  Christina Zeitz; Samuel G Jacobson; Christian P Hamel; Kinga Bujakowska; Marion Neuillé; Elise Orhan; Xavier Zanlonghi; Marie-Elise Lancelot; Christelle Michiels; Sharon B Schwartz; Béatrice Bocquet; Aline Antonio; Claire Audier; Mélanie Letexier; Jean-Paul Saraiva; Tien D Luu; Florian Sennlaub; Hoan Nguyen; Olivier Poch; Hélène Dollfus; Odile Lecompte; Susanne Kohl; José-Alain Sahel; Shomi S Bhattacharya; Isabelle Audo
Journal:  Am J Hum Genet       Date:  2012-12-13       Impact factor: 11.025

6.  C-NAP1 and rootletin restrain DNA damage-induced centriole splitting and facilitate ciliogenesis.

Authors:  Pauline C Conroy; Chiara Saladino; Tiago J Dantas; Pierce Lalor; Peter Dockery; Ciaran G Morrison
Journal:  Cell Cycle       Date:  2012-10-15       Impact factor: 4.534

7.  Mutations in the mevalonate kinase (MVK) gene cause nonsyndromic retinitis pigmentosa.

Authors:  Anna M Siemiatkowska; L Ingeborgh van den Born; P Martin van Hagen; Monique Stoffels; Kornelia Neveling; Arjen Henkes; Mieke Kipping-Geertsema; Lies H Hoefsloot; Carel B Hoyng; Anna Simon; Anneke I den Hollander; Frans P M Cremers; Rob W J Collin
Journal:  Ophthalmology       Date:  2013-09-29       Impact factor: 12.079

8.  Further insights into GPR179: expression, localization, and associated pathogenic mechanisms leading to complete congenital stationary night blindness.

Authors:  Elise Orhan; Laurent Prézeau; Said El Shamieh; Kinga M Bujakowska; Christelle Michiels; Yvrick Zagar; Claire Vol; Shomi S Bhattacharya; José-Alain Sahel; Florian Sennlaub; Isabelle Audo; Christina Zeitz
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-12-09       Impact factor: 4.799

9.  Mutations in ARL2BP, encoding ADP-ribosylation-factor-like 2 binding protein, cause autosomal-recessive retinitis pigmentosa.

Authors:  Alice E Davidson; Nele Schwarz; Lina Zelinger; Gabriele Stern-Schneider; Amelia Shoemark; Benjamin Spitzbarth; Menachem Gross; Uri Laxer; Jacob Sosna; Panagiotis I Sergouniotis; Naushin H Waseem; Robert Wilson; Richard A Kahn; Vincent Plagnol; Uwe Wolfrum; Eyal Banin; Alison J Hardcastle; Michael E Cheetham; Dror Sharon; Andrew R Webster
Journal:  Am J Hum Genet       Date:  2013-07-11       Impact factor: 11.025

10.  Development and application of a next-generation-sequencing (NGS) approach to detect known and novel gene defects underlying retinal diseases.

Authors:  Isabelle Audo; Kinga M Bujakowska; Thierry Léveillard; Saddek Mohand-Saïd; Marie-Elise Lancelot; Aurore Germain; Aline Antonio; Christelle Michiels; Jean-Paul Saraiva; Mélanie Letexier; José-Alain Sahel; Shomi S Bhattacharya; Christina Zeitz
Journal:  Orphanet J Rare Dis       Date:  2012-01-25       Impact factor: 4.123

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  23 in total

Review 1.  Photoreceptor Cilia and Retinal Ciliopathies.

Authors:  Kinga M Bujakowska; Qin Liu; Eric A Pierce
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-10-03       Impact factor: 10.005

2.  Whole exome sequencing reveals GUCY2D as a major gene associated with cone and cone-rod dystrophy in Israel.

Authors:  Csilla H Lazar; Mousumi Mutsuddi; Adva Kimchi; Lina Zelinger; Liliana Mizrahi-Meissonnier; Devorah Marks-Ohana; Alexis Boleda; Rinki Ratnapriya; Dror Sharon; Anand Swaroop; Eyal Banin
Journal:  Invest Ophthalmol Vis Sci       Date:  2014-12-16       Impact factor: 4.799

Review 3.  Genetic characterization and disease mechanism of retinitis pigmentosa; current scenario.

Authors:  Muhammad Umar Ali; Muhammad Saif Ur Rahman; Jiang Cao; Ping Xi Yuan
Journal:  3 Biotech       Date:  2017-07-18       Impact factor: 2.406

4.  Mutations in IFT172 cause isolated retinal degeneration and Bardet-Biedl syndrome.

Authors:  Kinga M Bujakowska; Qi Zhang; Anna M Siemiatkowska; Qin Liu; Emily Place; Marni J Falk; Mark Consugar; Marie-Elise Lancelot; Aline Antonio; Christine Lonjou; Wassila Carpentier; Saddek Mohand-Saïd; Anneke I den Hollander; Frans P M Cremers; Bart P Leroy; Xiaowu Gai; José-Alain Sahel; L Ingeborgh van den Born; Rob W J Collin; Christina Zeitz; Isabelle Audo; Eric A Pierce
Journal:  Hum Mol Genet       Date:  2014-08-28       Impact factor: 6.150

5.  Whole-exome sequencing revealed HKDC1 as a candidate gene associated with autosomal-recessive retinitis pigmentosa.

Authors:  Lin Zhang; Zixi Sun; Peiquan Zhao; Lulin Huang; Mingchu Xu; Yeming Yang; Xue Chen; Fang Lu; Xiang Zhang; Hui Wang; Shanshan Zhang; Wenjing Liu; Zhilin Jiang; Shi Ma; Rui Chen; Chen Zhao; Zhenglin Yang; Ruifang Sui; Xianjun Zhu
Journal:  Hum Mol Genet       Date:  2018-12-01       Impact factor: 6.150

6.  Whole-exome sequencing reveals a novel frameshift mutation in the FAM161A gene causing autosomal recessive retinitis pigmentosa in the Indian population.

Authors:  Yu Zhou; Bibhuti B Saikia; Zhilin Jiang; Xiong Zhu; Yuqing Liu; Lulin Huang; Ramasamy Kim; Yin Yang; Chao Qu; Fang Hao; Bo Gong; Zhengfu Tai; Lihong Niu; Zhenglin Yang; Periasamy Sundaresan; Xianjun Zhu
Journal:  J Hum Genet       Date:  2015-08-06       Impact factor: 3.172

Review 7.  Genes and Mutations Causing Autosomal Dominant Retinitis Pigmentosa.

Authors:  Stephen P Daiger; Sara J Bowne; Lori S Sullivan
Journal:  Cold Spring Harb Perspect Med       Date:  2014-10-10       Impact factor: 6.915

Review 8.  Retinal dystrophies, genomic applications in diagnosis and prospects for therapy.

Authors:  Benjamin M Nash; Dale C Wright; John R Grigg; Bruce Bennetts; Robyn V Jamieson
Journal:  Transl Pediatr       Date:  2015-04

9.  Progressive RPE atrophy and photoreceptor death in KIZ-associated autosomal recessive retinitis pigmentosa.

Authors:  Yuchen Lin; Christine L Xu; Mark P Breazzano; Akemi J Tanaka; Joseph Ryu; Sarah R Levi; Ke Yao; Janet R Sparrow; Stephen H Tsang
Journal:  Ophthalmic Genet       Date:  2020-02-13       Impact factor: 1.274

10.  Whole Exome Sequencing Reveals Mutations in Known Retinal Disease Genes in 33 out of 68 Israeli Families with Inherited Retinopathies.

Authors:  Avigail Beryozkin; Elia Shevah; Adva Kimchi; Liliana Mizrahi-Meissonnier; Samer Khateb; Rinki Ratnapriya; Csilla H Lazar; Anat Blumenfeld; Tamar Ben-Yosef; Yitzhak Hemo; Jacob Pe'er; Eduard Averbuch; Michal Sagi; Alexis Boleda; Linn Gieser; Abraham Zlotogorski; Tzipora Falik-Zaccai; Ola Alimi-Kasem; Samuel G Jacobson; Itay Chowers; Anand Swaroop; Eyal Banin; Dror Sharon
Journal:  Sci Rep       Date:  2015-08-26       Impact factor: 4.379

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