Literature DB >> 24678852

Next-generation snake venomics: protein-locus resolution through venom proteome decomplexation.

Juan J Calvete1.   

Abstract

Venom research has been continuously enhanced by technological advances. High-throughput technologies are changing the classical paradigm of hypothesis-driven research to technology-driven approaches. However, the thesis advocated in this paper is that full proteome coverage at locus-specific resolution requires integrating the best of both worlds into a protocol that includes decomplexation of the venom proteome prior to liquid chromatography-tandem mass spectrometry matching against a species-specific transcriptome. This approach offers the possibility of proof-checking the species-specific contig database using proteomics data. Immunoaffinity chromatography constitutes the basis of an antivenomics workflow designed to quantify the extent of cross-reactivity of antivenoms against homologous and heterologous venom toxins. In the author's view, snake venomics and antivenomics form part of a biology-driven conceptual framework to unveil the genesis and natural history of venoms, and their within- and between-species toxicological and immunological divergences and similarities. Understanding evolutionary trends across venoms represents the Rosetta Stone for generating broad-ranging polyspecific antivenoms.

Keywords:  affinity chromatography; antivenom; antivenomics; mass spectrometry; snake venom; snakebite envenoming; venomics

Mesh:

Substances:

Year:  2014        PMID: 24678852     DOI: 10.1586/14789450.2014.900447

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  25 in total

Review 1.  Why do we study animal toxins?

Authors:  Yun Zhang
Journal:  Dongwuxue Yanjiu       Date:  2015-07-18

Review 2.  Advances in venomics: Modern separation techniques and mass spectrometry.

Authors:  Tarek Mohamed Abd El-Aziz; Antonio G Soares; James D Stockand
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2020-09-17       Impact factor: 3.205

3.  Venom-gland transcriptome and venom proteome of the Malaysian king cobra (Ophiophagus hannah).

Authors:  Choo Hock Tan; Kae Yi Tan; Shin Yee Fung; Nget Hong Tan
Journal:  BMC Genomics       Date:  2015-09-10       Impact factor: 3.969

Review 4.  Omics meets biology: application to the design and preclinical assessment of antivenoms.

Authors:  Juan J Calvete; Libia Sanz; Davinia Pla; Bruno Lomonte; José María Gutiérrez
Journal:  Toxins (Basel)       Date:  2014-12-15       Impact factor: 4.546

5.  Comparative Venomics of the Vipera ammodytes transcaucasiana and Vipera ammodytes montandoni from Turkey Provides Insights into Kinship.

Authors:  Benjamin-Florian Hempel; Maik Damm; Bayram Göçmen; Mert Karis; Mehmet Anıl Oguz; Ayse Nalbantsoy; Roderich D Süssmuth
Journal:  Toxins (Basel)       Date:  2018-01-01       Impact factor: 4.546

Review 6.  Venomics-Accelerated Cone Snail Venom Peptide Discovery.

Authors:  S W A Himaya; Richard J Lewis
Journal:  Int J Mol Sci       Date:  2018-03-09       Impact factor: 5.923

Review 7.  Protein-species quantitative venomics: looking through a crystal ball.

Authors:  Juan J Calvete; Daniel Petras; Francisco Calderón-Celis; Bruno Lomonte; Jorge Ruiz Encinar; Alfredo Sanz-Medel
Journal:  J Venom Anim Toxins Incl Trop Dis       Date:  2017-04-28

8.  Venom On-a-Chip: A Fast and Efficient Method for Comparative Venomics.

Authors:  Giulia Zancolli; Libia Sanz; Juan J Calvete; Wolfgang Wüster
Journal:  Toxins (Basel)       Date:  2017-05-28       Impact factor: 4.546

9.  Venomic Analysis of the Poorly Studied Desert Coral Snake, Micrurus tschudii tschudii, Supports the 3FTx/PLA₂ Dichotomy across Micrurus Venoms.

Authors:  Libia Sanz; Davinia Pla; Alicia Pérez; Yania Rodríguez; Alfonso Zavaleta; Maria Salas; Bruno Lomonte; Juan J Calvete
Journal:  Toxins (Basel)       Date:  2016-06-07       Impact factor: 4.546

10.  Full-Length Venom Protein cDNA Sequences from Venom-Derived mRNA: Exploring Compositional Variation and Adaptive Multigene Evolution.

Authors:  Cassandra M Modahl; Stephen P Mackessy
Journal:  PLoS Negl Trop Dis       Date:  2016-06-09
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