Literature DB >> 32971366

Advances in venomics: Modern separation techniques and mass spectrometry.

Tarek Mohamed Abd El-Aziz1, Antonio G Soares2, James D Stockand2.   

Abstract

Snake venoms are complex chemical mixtures of biologically active proteins and non-protein components. Toxins have a wide range of targets and effects to include ion channels and membrane receptors, and platelet aggregation and platelet plug formation. Toxins target these effectors and effects at high affinity and selectivity. From a pharmacological perspective, snake venom compounds are a valuable resource for drug discovery and development. However, a major challenge to drug discovery using snake venoms is isolating and analyzing the bioactive proteins and peptides in these complex mixtures. Getting molecular information from complex mixtures such as snake venoms requires proteomic analyses, generally combined with transcriptomic analyses of venom glands. The present review summarizes current knowledge and highlights important recent advances in venomics with special emphasis on contemporary separation techniques and bioinformatics that have begun to elaborate the complexity of snake venoms. Several analytical techniques such as two-dimensional gel electrophoresis, RP-HPLC, size exclusion chromatography, ion exchange chromatography, MALDI-TOF-MS, and LC-ESI-QTOF-MS have been employed in this regard. The improvement of separation approaches such as multidimensional-HPLC, 2D-electrophoresis coupled to soft-ionization (MALDI and ESI) mass spectrometry has been critical to obtain an accurate picture of the startling complexity of venoms. In the case of bioinformatics, a variety of software tools such as PEAKS also has been used successfully. Such information gleaned from venomics is important to both predicting and resolving the biological activity of the active components of venoms, which in turn is key for the development of new drugs based on these venom components. Published by Elsevier B.V.

Entities:  

Keywords:  Animal venoms; Drug discovery; Mass spectrometry; Separation methods; Venomic

Mesh:

Substances:

Year:  2020        PMID: 32971366      PMCID: PMC8174749          DOI: 10.1016/j.jchromb.2020.122352

Source DB:  PubMed          Journal:  J Chromatogr B Analyt Technol Biomed Life Sci        ISSN: 1570-0232            Impact factor:   3.205


  123 in total

1.  Derivatization procedures to facilitate de novo sequencing of lysine-terminated tryptic peptides using postsource decay matrix-assisted laser desorption/ionization mass spectrometry.

Authors:  T Keough; M P Lacey; R S Youngquist
Journal:  Rapid Commun Mass Spectrom       Date:  2000       Impact factor: 2.419

Review 2.  Gel filtration: size exclusion chromatography.

Authors:  Lars Hagel
Journal:  Methods Biochem Anal       Date:  2011

3.  Revealing the functional structure of a new PLA2 K49 from Bothriopsis taeniata snake venom employing automatic "de novo" sequencing using CID/HCD/ETD MS/MS analyses.

Authors:  Victor Corasolla Carregari; Jie Dai; Thiago Verano-Braga; Thalita Rocha; Luis Alberto Ponce-Soto; Sergio Marangoni; Peter Roepstorff
Journal:  J Proteomics       Date:  2015-10-22       Impact factor: 4.044

4.  Fast analysis of low molecular mass compounds present in snake venom: identification of ten new pyroglutamate-containing peptides.

Authors:  Luciana Serrão Wermelinger; Denis L S Dutra; Ana L Oliveira-Carvalho; Márcia Regina Soares; Carlos Bloch; Russolina B Zingali
Journal:  Rapid Commun Mass Spectrom       Date:  2005       Impact factor: 2.419

Review 5.  Snake venom components and their applications in biomedicine.

Authors:  D C I Koh; A Armugam; K Jeyaseelan
Journal:  Cell Mol Life Sci       Date:  2006-12       Impact factor: 9.261

Review 6.  Snake venomics. Strategy and applications.

Authors:  Juan J Calvete; Paula Juárez; Libia Sanz
Journal:  J Mass Spectrom       Date:  2007-11       Impact factor: 1.982

7.  High-resolution reversed-phase high-performance liquid chromatography of peptides and proteins.

Authors:  M I Aguilar; M T Hearn
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

8.  Coralsnake Venomics: Analyses of Venom Gland Transcriptomes and Proteomes of Six Brazilian Taxa.

Authors:  Steven D Aird; Nelson Jorge da Silva; Lijun Qiu; Alejandro Villar-Briones; Vera Aparecida Saddi; Mariana Pires de Campos Telles; Miguel L Grau; Alexander S Mikheyev
Journal:  Toxins (Basel)       Date:  2017-06-08       Impact factor: 4.546

9.  Basic matrices for the matrix-assisted laser desorption/ionization mass spectrometry of proteins and oligonucleotides.

Authors:  M C Fitzgerald; G R Parr; L M Smith
Journal:  Anal Chem       Date:  1993-11-15       Impact factor: 6.986

10.  Preclinical evaluation of three polyspecific antivenoms against the venom of Echis ocellatus: Neutralization of toxic activities and antivenomics.

Authors:  Juan J Calvete; Ana Silvia Arias; Yania Rodríguez; Sarai Quesada-Bernat; Laura V Sánchez; Jean Philippe Chippaux; Davinia Pla; José María Gutiérrez
Journal:  Toxicon       Date:  2016-07-01       Impact factor: 3.033

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  2 in total

Review 1.  A critical look at challenges and future scopes of bioactive compounds and their incorporations in the food, energy, and pharmaceutical sector.

Authors:  Sanidhya Pai; Akshatha Hebbar; Subbalaxmi Selvaraj
Journal:  Environ Sci Pollut Res Int       Date:  2022-03-02       Impact factor: 5.190

Review 2.  Old World Vipers-A Review about Snake Venom Proteomics of Viperinae and Their Variations.

Authors:  Maik Damm; Benjamin-Florian Hempel; Roderich D Süssmuth
Journal:  Toxins (Basel)       Date:  2021-06-17       Impact factor: 4.546

  2 in total

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