Literature DB >> 24674624

Functional overlaps between XLF and the ATM-dependent DNA double strand break response.

Vipul Kumar1, Frederick W Alt2, Valentyn Oksenych3.   

Abstract

Developing B and T lymphocytes generate programmed DNA double strand breaks (DSBs) during the V(D)J recombination process that assembles exons that encode the antigen-binding variable regions of antibodies. In addition, mature B lymphocytes generate programmed DSBs during the immunoglobulin heavy chain (IgH) class switch recombination (CSR) process that allows expression of different antibody heavy chain constant regions that provide different effector functions. During both V(D)J recombination and CSR, DSB intermediates are sensed by the ATM-dependent DSB response (DSBR) pathway, which also contributes to their joining via classical non-homologous end-joining (C-NHEJ). The precise nature of the interplay between the DSBR and C-NHEJ pathways in the context of DSB repair via C-NHEJ remains under investigation. Recent studies have shown that the XLF C-NHEJ factor has functional redundancy with several members of the ATM-dependent DSBR pathway in C-NHEJ, highlighting unappreciated major roles for both XLF as well as the DSBR in V(D)J recombination, CSR and C-NHEJ in general. In this review, we discuss current knowledge of the mechanisms that contribute to the repair of DSBs generated during B lymphocyte development and activation with a focus on potential functionally redundant roles of XLF and ATM-dependent DSBR factors.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  53BP1; ATM; Cernunnos; DNA-PKcs; NHEJ; V(D)J recombination

Mesh:

Substances:

Year:  2014        PMID: 24674624      PMCID: PMC4017585          DOI: 10.1016/j.dnarep.2014.01.010

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  148 in total

Review 1.  The mechanism and regulation of chromosomal V(D)J recombination.

Authors:  Craig H Bassing; Wojciech Swat; Frederick W Alt
Journal:  Cell       Date:  2002-04       Impact factor: 41.582

2.  Genomic instability in mice lacking histone H2AX.

Authors:  Arkady Celeste; Simone Petersen; Peter J Romanienko; Oscar Fernandez-Capetillo; Hua Tang Chen; Olga A Sedelnikova; Bernardo Reina-San-Martin; Vincenzo Coppola; Eric Meffre; Michael J Difilippantonio; Christophe Redon; Duane R Pilch; Alexandru Olaru; Michael Eckhaus; R Daniel Camerini-Otero; Lino Tessarollo; Ferenc Livak; Katia Manova; William M Bonner; Michel C Nussenzweig; André Nussenzweig
Journal:  Science       Date:  2002-04-04       Impact factor: 47.728

3.  IgH class switch recombination to IgG1 in DNA-PKcs-deficient B cells.

Authors:  John P Manis; Darryll Dudley; Lianne Kaylor; Frederick W Alt
Journal:  Immunity       Date:  2002-04       Impact factor: 31.745

4.  Unrepaired DNA breaks in p53-deficient cells lead to oncogenic gene amplification subsequent to translocations.

Authors:  Chengming Zhu; Kevin D Mills; David O Ferguson; Charles Lee; John Manis; James Fleming; Yijie Gao; Cynthia C Morton; Frederick W Alt
Journal:  Cell       Date:  2002-06-28       Impact factor: 41.582

5.  Synapsis of DNA ends by DNA-dependent protein kinase.

Authors:  Lisa G DeFazio; Rachel M Stansel; Jack D Griffith; Gilbert Chu
Journal:  EMBO J       Date:  2002-06-17       Impact factor: 11.598

6.  DNA ligase IV suppresses medulloblastoma formation.

Authors:  Youngsoo Lee; Peter J McKinnon
Journal:  Cancer Res       Date:  2002-11-15       Impact factor: 12.701

7.  Increased ionizing radiation sensitivity and genomic instability in the absence of histone H2AX.

Authors:  Craig H Bassing; Katrin F Chua; JoAnn Sekiguchi; Heikyung Suh; Scott R Whitlow; James C Fleming; Brianna C Monroe; David N Ciccone; Catherine Yan; Katerina Vlasakova; David M Livingston; David O Ferguson; Ralph Scully; Frederick W Alt
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

8.  Hairpin opening and overhang processing by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and V(D)J recombination.

Authors:  Yunmei Ma; Ulrich Pannicke; Klaus Schwarz; Michael R Lieber
Journal:  Cell       Date:  2002-03-22       Impact factor: 41.582

9.  The embryonic lethality in DNA ligase IV-deficient mice is rescued by deletion of Ku: implications for unifying the heterogeneous phenotypes of NHEJ mutants.

Authors:  Zarir E Karanjawala; Noritaka Adachi; Ryan A Irvine; Eui K Oh; Darryl Shibata; Klaus Schwarz; Chih-Lin Hsieh; Michael R Lieber
Journal:  DNA Repair (Amst)       Date:  2002-12-05

10.  Leaky Scid phenotype associated with defective V(D)J coding end processing in Artemis-deficient mice.

Authors:  Sean Rooney; JoAnn Sekiguchi; Chengming Zhu; Hwei Ling Cheng; John Manis; Scott Whitlow; Jeff DeVido; Dan Foy; Jayanta Chaudhuri; David Lombard; Frederick W Alt
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

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  31 in total

1.  Transcription-associated processes cause DNA double-strand breaks and translocations in neural stem/progenitor cells.

Authors:  Bjoern Schwer; Pei-Chi Wei; Amelia N Chang; Jennifer Kao; Zhou Du; Robin M Meyers; Frederick W Alt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-12       Impact factor: 11.205

2.  What a 'Ku'incidence!: parallel discoveries of a new DNA repair factor.

Authors:  M Mistrik; J Bartek
Journal:  Cell Death Differ       Date:  2015-06       Impact factor: 15.828

3.  Linking DNA polymerase theta structure and function in health and disease.

Authors:  Kelly Beagan; Mitch McVey
Journal:  Cell Mol Life Sci       Date:  2015-10-29       Impact factor: 9.261

4.  Restoration of ATM Expression in DNA-PKcs-Deficient Cells Inhibits Signal End Joining.

Authors:  Jessica A Neal; Yao Xu; Masumi Abe; Eric Hendrickson; Katheryn Meek
Journal:  J Immunol       Date:  2016-02-26       Impact factor: 5.422

5.  PAXX and XLF DNA repair factors are functionally redundant in joining DNA breaks in a G1-arrested progenitor B-cell line.

Authors:  Vipul Kumar; Frederick W Alt; Richard L Frock
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

Review 6.  Related Mechanisms of Antibody Somatic Hypermutation and Class Switch Recombination.

Authors:  Joyce K Hwang; Frederick W Alt; Leng-Siew Yeap
Journal:  Microbiol Spectr       Date:  2015-02

7.  An in vivo study of the impact of deficiency in the DNA repair proteins PAXX and XLF on development and maturation of the hemolymphoid system.

Authors:  Stefania Musilli; Vincent Abramowski; Benoit Roch; Jean-Pierre de Villartay
Journal:  J Biol Chem       Date:  2020-01-08       Impact factor: 5.157

8.  Deficiency of XLF and PAXX prevents DNA double-strand break repair by non-homologous end joining in lymphocytes.

Authors:  Putzer J Hung; Bo-Ruei Chen; Rosmy George; Caleb Liberman; Abigail J Morales; Pedro Colon-Ortiz; Jessica K Tyler; Barry P Sleckman; Andrea L Bredemeyer
Journal:  Cell Cycle       Date:  2016-11-10       Impact factor: 4.534

9.  Synthetic lethality between murine DNA repair factors XLF and DNA-PKcs is rescued by inactivation of Ku70.

Authors:  Mengtan Xing; Magnar Bjørås; Jeremy A Daniel; Frederick W Alt; Valentyn Oksenych
Journal:  DNA Repair (Amst)       Date:  2017-07-26

Review 10.  DNA damage repair in glioblastoma: current perspectives on its role in tumour progression, treatment resistance and PIKKing potential therapeutic targets.

Authors:  Mathew Lozinski; Nikola A Bowden; Moira C Graves; Michael Fay; Paul A Tooney
Journal:  Cell Oncol (Dordr)       Date:  2021-05-31       Impact factor: 6.730

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