Literature DB >> 24671969

A critique of Rossberg et al.: Noise obscures the genetic signal of meiobiotal ecospecies in ecogenomic datasets.

M J Morgan1, D Bass, H Bik, C W Birky, M Blaxter, M D Crisp, S Derycke, D Fitch, D Fontaneto, C M Hardy, A J King, K C Kiontke, T Moens, J W Pawlowski, D Porazinska, C Q Tang, W K Thomas, D K Yeates, S Creer.   

Abstract

Mesh:

Year:  2014        PMID: 24671969      PMCID: PMC3996598          DOI: 10.1098/rspb.2013.3076

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


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  16 in total

Review 1.  Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

Authors:  S Creer; V G Fonseca; D L Porazinska; R M Giblin-Davis; W Sung; D M Power; M Packer; G R Carvalho; M L Blaxter; P J D Lambshead; W K Thomas
Journal:  Mol Ecol       Date:  2010-03       Impact factor: 6.185

2.  Sequence-based species delimitation for the DNA taxonomy of undescribed insects.

Authors:  Joan Pons; Timothy G Barraclough; Jesus Gomez-Zurita; Anabela Cardoso; Daniel P Duran; Steaphan Hazell; Sophien Kamoun; William D Sumlin; Alfried P Vogler
Journal:  Syst Biol       Date:  2006-08       Impact factor: 15.683

3.  Phylogeography of the Rhabditis (Pellioditis) marina species complex: evidence for long-distance dispersal, and for range expansions and restricted gene flow in the northeast Atlantic.

Authors:  S Derycke; T Remerie; T Backeljau; A Vierstraete; J Vanfleteren; M Vincx; T Moens
Journal:  Mol Ecol       Date:  2008-06-28       Impact factor: 6.185

4.  A molecular evolutionary framework for the phylum Nematoda.

Authors:  M L Blaxter; P De Ley; J R Garey; L X Liu; P Scheldeman; A Vierstraete; J R Vanfleteren; L Y Mackey; M Dorris; L M Frisse; J T Vida; W K Thomas
Journal:  Nature       Date:  1998-03-05       Impact factor: 49.962

5.  Second-generation environmental sequencing unmasks marine metazoan biodiversity.

Authors:  Vera G Fonseca; Gary R Carvalho; Way Sung; Harriet F Johnson; Deborah M Power; Simon P Neill; Margaret Packer; Mark L Blaxter; P John D Lambshead; W Kelley Thomas; Simon Creer
Journal:  Nat Commun       Date:  2010-10-19       Impact factor: 14.919

6.  Phylogeny, taxonomy, and astounding genetic diversity of glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa).

Authors:  Alexis T Howe; David Bass; Keith Vickerman; Ema E Chao; Thomas Cavalier-Smith
Journal:  Protist       Date:  2009-03-25

7.  Phylogeny and classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.

Authors:  David Bass; Alexis T Howe; Alexandre P Mylnikov; Keith Vickerman; Ema E Chao; James Edwards Smallbone; Jemma Snell; Charles Cabral; Thomas Cavalier-Smith
Journal:  Protist       Date:  2009-07-08

8.  Improved inference of taxonomic richness from environmental DNA.

Authors:  Matthew J Morgan; Anthony A Chariton; Diana M Hartley; Leon N Court; Christopher M Hardy
Journal:  PLoS One       Date:  2013-08-26       Impact factor: 3.240

9.  ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

Authors:  Yijun Sun; Yunpeng Cai; Li Liu; Fahong Yu; Michael L Farrell; William McKendree; William Farmerie
Journal:  Nucleic Acids Res       Date:  2009-05-05       Impact factor: 16.971

10.  DNA evidence for global dispersal and probable endemicity of protozoa.

Authors:  David Bass; Thomas A Richards; Lena Matthai; Victoria Marsh; Thomas Cavalier-Smith
Journal:  BMC Evol Biol       Date:  2007-09-13       Impact factor: 3.260

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  3 in total

1.  Current noise-removal methods can create false signals in ecogenomic data.

Authors:  Axel G Rossberg; Tim Rogers; Alan J McKane
Journal:  Proc Biol Sci       Date:  2014-03-26       Impact factor: 5.349

2.  Preliminary Comparison of Oral and Intestinal Human Microbiota in Patients with Colorectal Cancer: A Pilot Study.

Authors:  Edda Russo; Giovanni Bacci; Carolina Chiellini; Camilla Fagorzi; Elena Niccolai; Antonio Taddei; Federica Ricci; Maria N Ringressi; Rossella Borrelli; Filippo Melli; Manouela Miloeva; Paolo Bechi; Alessio Mengoni; Renato Fani; Amedeo Amedei
Journal:  Front Microbiol       Date:  2018-01-12       Impact factor: 5.640

3.  Biodiversity estimates and ecological interpretations of meiofaunal communities are biased by the taxonomic approach.

Authors:  Francesca Leasi; Joseph L Sevigny; Eric M Laflamme; Tom Artois; Marco Curini-Galletti; Alberto de Jesus Navarrete; Maikon Di Domenico; Freya Goetz; Jeffrey A Hall; Rick Hochberg; Katharina M Jörger; Ulf Jondelius; M Antonio Todaro; Herman H Wirshing; Jon L Norenburg; W Kelley Thomas
Journal:  Commun Biol       Date:  2018-08-14
  3 in total

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