Literature DB >> 24667330

The cyanobacterial clock and metabolism.

Gopal Pattanayak1, Michael J Rust2.   

Abstract

Cyanobacteria possess the simplest known circadian clock, which presents a unique opportunity to study how rhythms are generated and how input signals from the environment reset the clock time. The kaiABC locus forms the core of the oscillator, and the remarkable ability to reconstitute oscillations using purified KaiABC proteins has allowed researchers to study mechanism using the tools of quantitative biochemistry. Autotrophic cyanobacteria experience major shifts in metabolism following a light-dark transition, and recent work suggests that input mechanisms that couple the day-night cycle to the clock involve energy and redox metabolites acting directly on clock proteins. We offer a summary of the current state of knowledge in this system and present a perspective for future lines of investigation.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24667330      PMCID: PMC4068238          DOI: 10.1016/j.mib.2014.02.010

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  42 in total

1.  CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock.

Authors:  O Schmitz; M Katayama; S B Williams; T Kondo; S S Golden
Journal:  Science       Date:  2000-08-04       Impact factor: 47.728

2.  Biochemical properties of CikA, an unusual phytochrome-like histidine protein kinase that resets the circadian clock in Synechococcus elongatus PCC 7942.

Authors:  Michinori Mutsuda; Klaus-Peter Michel; Xiaofan Zhang; Beronda L Montgomery; Susan S Golden
Journal:  J Biol Chem       Date:  2003-03-07       Impact factor: 5.157

3.  KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria.

Authors:  Hideo Iwasaki; Taeko Nishiwaki; Yohko Kitayama; Masato Nakajima; Takao Kondo
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

4.  KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system.

Authors:  Yohko Kitayama; Hideo Iwasaki; Taeko Nishiwaki; Takao Kondo
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

5.  ldpA encodes an iron-sulfur protein involved in light-dependent modulation of the circadian period in the cyanobacterium Synechococcus elongatus PCC 7942.

Authors:  Mitsunori Katayama; Takao Kondo; Jin Xiong; Susan S Golden
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

6.  Circadian control of global gene expression by the cyanobacterial master regulator RpaA.

Authors:  Joseph S Markson; Joseph R Piechura; Anna M Puszynska; Erin K O'Shea
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

7.  Attenuation of the posttranslational oscillator via transcription-translation feedback enhances circadian-phase shifts in Synechococcus.

Authors:  Norimune Hosokawa; Hiroko Kushige; Hideo Iwasaki
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

8.  Robust and tunable circadian rhythms from differentially sensitive catalytic domains.

Authors:  Connie Phong; Joseph S Markson; Crystal M Wilhoite; Michael J Rust
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

9.  Two antagonistic clock-regulated histidine kinases time the activation of circadian gene expression.

Authors:  Andrian Gutu; Erin K O'Shea
Journal:  Mol Cell       Date:  2013-03-28       Impact factor: 17.970

10.  Cooperative KaiA-KaiB-KaiC interactions affect KaiB/SasA competition in the circadian clock of cyanobacteria.

Authors:  Roger Tseng; Yong-Gang Chang; Ian Bravo; Robert Latham; Abdullah Chaudhary; Nai-Wei Kuo; Andy Liwang
Journal:  J Mol Biol       Date:  2013-10-07       Impact factor: 5.469

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  10 in total

Review 1.  The molecular basis of metabolic cycles and their relationship to circadian rhythms.

Authors:  Jane Mellor
Journal:  Nat Struct Mol Biol       Date:  2016-12-06       Impact factor: 15.369

2.  Expression and Purification of Cyanobacterial Circadian Clock Protein KaiC and Determination of Its Auto-phosphatase Activity.

Authors:  Qiang Chen; Lingling Yu; Xiao Tan; Sen Liu
Journal:  Bio Protoc       Date:  2017-02-20

3.  Increasing MinD's Membrane Affinity Yields Standing Wave Oscillations and Functional Gradients on Flat Membranes.

Authors:  Simon Kretschmer; Tamara Heermann; Andrea Tassinari; Philipp Glock; Petra Schwille
Journal:  ACS Synth Biol       Date:  2021-04-21       Impact factor: 5.110

Review 4.  Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach.

Authors:  Stefanie Westermark; Ralf Steuer
Journal:  Front Bioeng Biotechnol       Date:  2016-12-26

5.  Minimal tool set for a prokaryotic circadian clock.

Authors:  Nicolas M Schmelling; Robert Lehmann; Paushali Chaudhury; Christian Beck; Sonja-Verena Albers; Ilka M Axmann; Anika Wiegard
Journal:  BMC Evol Biol       Date:  2017-07-21       Impact factor: 3.260

6.  Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing.

Authors:  Feiqiao Brian Yu; Lisa Willis; Rosanna Man Wah Chau; Alessandro Zambon; Mark Horowitz; Devaki Bhaya; Kerwyn Casey Huang; Stephen R Quake
Journal:  BMC Biol       Date:  2017-02-14       Impact factor: 7.431

7.  Synechocystis KaiC3 Displays Temperature- and KaiB-Dependent ATPase Activity and Is Important for Growth in Darkness.

Authors:  Anika Wiegard; Christin Köbler; Katsuaki Oyama; Anja K Dörrich; Chihiro Azai; Kazuki Terauchi; Annegret Wilde; Ilka M Axmann
Journal:  J Bacteriol       Date:  2020-01-29       Impact factor: 3.490

8.  A dynamic interaction process between KaiA and KaiC is critical to the cyanobacterial circadian oscillator.

Authors:  Pei Dong; Ying Fan; Jianqiang Sun; Mengting Lv; Ming Yi; Xiao Tan; Sen Liu
Journal:  Sci Rep       Date:  2016-04-26       Impact factor: 4.379

9.  Synchronization by uncorrelated noise: interacting rhythms in interconnected oscillator networks.

Authors:  John Hongyu Meng; Hermann Riecke
Journal:  Sci Rep       Date:  2018-05-03       Impact factor: 4.379

10.  Circadian clock-controlled gene expression in co-cultured, mat-forming cyanobacteria.

Authors:  Christine Hörnlein; Veronique Confurius-Guns; Michele Grego; Lucas J Stal; Henk Bolhuis
Journal:  Sci Rep       Date:  2020-08-24       Impact factor: 4.379

  10 in total

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