Literature DB >> 24656079

Toward optimal-resolution NMR of intrinsically disordered proteins.

Jiří Nováček1, Lukáš Žídek2, Vladimír Sklenář3.   

Abstract

Proteins, which, in their native conditions, sample a multitude of distinct conformational states characterized by high spatiotemporal heterogeneity, most often termed as intrinsically disordered proteins (IDPs), have become a target of broad interest over the past 15years. With the growing evidence of their important roles in fundamental cellular processes, there is an urgent need to characterize the conformational behavior of IDPs at the highest possible level. The unique feature of NMR spectroscopy in the context of IDPs is its ability to supply details of their structural and temporal alterations at atomic-level resolution. Here, we briefly review recently proposed NMR-based strategies to characterize transient states populated by IDPs and summarize the latest achievements and future prospects in methodological development. Because low chemical shift dispersion represents the major obstacle encountered when studying IDPs by nuclear magnetic resonance, particular attention is paid to techniques allowing one to approach the physical limits of attainable resolution.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  IDPRs; IDPs; Multi-dimensional NMR; NUS; Non-uniform sampling; PRE; RDC; RNAP δ-subunit

Mesh:

Substances:

Year:  2014        PMID: 24656079     DOI: 10.1016/j.jmr.2013.12.008

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  13 in total

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Authors:  Christoph Wiedemann; Nishit Goradia; Sabine Häfner; Christian Herbst; Matthias Görlach; Oliver Ohlenschläger; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

2.  Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Authors:  Pavel Srb; Jiří Nováček; Pavel Kadeřávek; Alžbeta Rabatinová; Libor Krásný; Jitka Žídková; Janette Bobálová; Vladimír Sklenář; Lukáš Žídek
Journal:  J Biomol NMR       Date:  2017-10-25       Impact factor: 2.835

3.  Choice of Force Field for Proteins Containing Structured and Intrinsically Disordered Regions.

Authors:  Vojtěch Zapletal; Arnošt Mládek; Kateřina Melková; Petr Louša; Erik Nomilner; Zuzana Jaseňáková; Vojtěch Kubáň; Markéta Makovická; Alice Laníková; Lukáš Žídek; Jozef Hritz
Journal:  Biophys J       Date:  2020-02-29       Impact factor: 4.033

4.  Functionally specific binding regions of microtubule-associated protein 2c exhibit distinct conformations and dynamics.

Authors:  Kateřina Melková; Vojtěch Zapletal; Séverine Jansen; Erik Nomilner; Milan Zachrdla; Jozef Hritz; Jiří Nováček; Markus Zweckstetter; Malene R Jensen; Martin Blackledge; Lukáš Žídek
Journal:  J Biol Chem       Date:  2018-06-20       Impact factor: 5.157

5.  Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy.

Authors:  Alessandro Piai; Eduardo O Calçada; Thomas Tarenzi; Alessandro Del Grande; Mihaly Varadi; Peter Tompa; Isabella C Felli; Roberta Pierattelli
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

6.  Quarterly intrinsic disorder digest (April-May-June, 2014).

Authors:  Shelly DeForte; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2017-03-01

7.  Easy and unambiguous sequential assignments of intrinsically disordered proteins by correlating the backbone 15N or 13C' chemical shifts of multiple contiguous residues in highly resolved 3D spectra.

Authors:  Yuichi Yoshimura; Natalia V Kulminskaya; Frans A A Mulder
Journal:  J Biomol NMR       Date:  2015-01-11       Impact factor: 2.835

8.  "CON-CON" assignment strategy for highly flexible intrinsically disordered proteins.

Authors:  Alessandro Piai; Tomáš Hošek; Leonardo Gonnelli; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński; Bernhard Brutscher; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  J Biomol NMR       Date:  2014-10-19       Impact factor: 2.835

9.  Direct detection of carbon and nitrogen nuclei for high-resolution analysis of intrinsically disordered proteins using NMR spectroscopy.

Authors:  E B Gibbs; R W Kriwacki
Journal:  Methods       Date:  2018-01-16       Impact factor: 3.608

10.  The Neurite Outgrowth Inhibitory Nogo-A-Δ20 Region Is an Intrinsically Disordered Segment Harbouring Three Stretches with Helical Propensity.

Authors:  Viviane Zelenay; Michael E Arzt; Stefan Bibow; Martin E Schwab; Roland Riek
Journal:  PLoS One       Date:  2016-09-09       Impact factor: 3.240

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