Literature DB >> 24653669

TRANSDUCER GENERATED ARRAYS OF ROBOTIC NANO-ARMS.

Egor Dolzhenko1, Nataša Jonoska1, Nadrian C Seeman2.   

Abstract

We consider sets of two-dimensional arrays, called here transducer generated languages, obtained by iterative applications of transducers (finite state automata with output). Each transducer generates a set of blocks of symbols such that the bottom row of a block is an input string accepted by the transducer and, by iterative application of the transducer, each row of the block is an output of the transducer on the preceding row. We show how these arrays can be implemented through molecular assembly of triple crossover DNA molecules. Such assembly could serve as a scaffold for arranging molecular robotic arms capable for simultaneous movements. We observe that transducer generated languages define a class of languages which is a proper subclass of recognizable picture languages, but it containing the class of all factorial local two-dimensional languages. By taking the average growth rate of the number of blocks in the language as a measure of its complexity, we further observe that arrays with high complexity patterns can be generated in this way.

Entities:  

Keywords:  DNA arrays; DNA tiles; finite state automata with output; local languages; picture languages; robotic arms; transducers; two-dimensional languages

Year:  2010        PMID: 24653669      PMCID: PMC3957271          DOI: 10.1007/s11047-009-9157-5

Source DB:  PubMed          Journal:  Nat Comput        ISSN: 1567-7818            Impact factor:   1.690


  9 in total

1.  New computing paradigms suggested by DNA computing: computing by carving.

Authors:  V Manca; C Martín-Vide; G Păun
Journal:  Biosystems       Date:  1999-10       Impact factor: 1.973

2.  A robust DNA mechanical device controlled by hybridization topology.

Authors:  Hao Yan; Xiaoping Zhang; Zhiyong Shen; Nadrian C Seeman
Journal:  Nature       Date:  2002-01-03       Impact factor: 49.962

3.  Algorithmic Self-Assembly of DNA: Theoretical Motivations and 2D Assembly Experiments.

Authors:  E Winfree
Journal:  J Biomol Struct Dyn       Date:  2000

4.  Translation of DNA signals into polymer assembly instructions.

Authors:  Shiping Liao; Nadrian C Seeman
Journal:  Science       Date:  2004-12-17       Impact factor: 47.728

5.  Operation of a DNA robot arm inserted into a 2D DNA crystalline substrate.

Authors:  Baoquan Ding; Nadrian C Seeman
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

6.  A simple DNA-based translation system.

Authors:  Alejandra V Garibotti; Shiping Liao; Nadrian C Seeman
Journal:  Nano Lett       Date:  2007-01-23       Impact factor: 11.189

7.  Design and self-assembly of two-dimensional DNA crystals.

Authors:  E Winfree; F Liu; L A Wenzler; N C Seeman
Journal:  Nature       Date:  1998-08-06       Impact factor: 49.962

8.  DNA double-crossover molecules.

Authors:  T J Fu; N C Seeman
Journal:  Biochemistry       Date:  1993-04-06       Impact factor: 3.162

9.  Algorithmic self-assembly of DNA Sierpinski triangles.

Authors:  Paul W K Rothemund; Nick Papadakis; Erik Winfree
Journal:  PLoS Biol       Date:  2004-12-07       Impact factor: 8.029

  9 in total
  1 in total

1.  Computing by molecular self-assembly.

Authors:  Nataša Jonoska; Nadrian C Seeman
Journal:  Interface Focus       Date:  2012-02-08       Impact factor: 3.906

  1 in total

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